Alignments for a candidate for proA in Sulfuritalea hydrogenivorans DSM 22779

Align Gamma-glutamyl phosphate reductase; GPR; Glutamate-5-semialdehyde dehydrogenase; Glutamyl-gamma-semialdehyde dehydrogenase; GSA dehydrogenase; EC 1.2.1.41 (characterized)
to candidate WP_041100688.1 SUTH_RS16085 glutamate-5-semialdehyde dehydrogenase

Query= SwissProt::P07004
         (417 letters)



>NCBI__GCF_000828635.1:WP_041100688.1
          Length = 418

 Score =  374 bits (961), Expect = e-108
 Identities = 188/416 (45%), Positives = 277/416 (66%), Gaps = 4/416 (0%)

Query: 2   LEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEA 61
           ++Q+G  A++AS   A+ S+  KN  L  +A  +  + + +L ANA DVADAR NGL  A
Sbjct: 7   MQQVGRQAREASRATARASTAAKNTALLAMAQAIRERRDELLAANAADVADARNNGLDAA 66

Query: 62  MLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYEA 121
           M+DRL LT   ++ +A  + QV  L DP+G++ D     SG+++ + RVPLGV+G+IYEA
Sbjct: 67  MIDRLTLTEKSVEAMAQGLEQVAALPDPIGEITDMKRRPSGIQVGKMRVPLGVVGIIYEA 126

Query: 122 RPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPDR 181
           RPNVT D A+LCLK+GNA ILRGGKE+ R N A  A ++  LK+ GLP  AVQ I+  DR
Sbjct: 127 RPNVTADAAALCLKSGNAAILRGGKESLRANQAIAACVRAGLKAAGLPETAVQVIETTDR 186

Query: 182 ALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESVEIAEALKV 241
           A V  ++ M +Y+D+++PRGG GL +   +++ +PVI    G CH+YVD++ +  +AL++
Sbjct: 187 AAVGHLVAMPEYVDVIVPRGGKGLIERISKEARVPVIKHLDGNCHVYVDDAADAGKALRI 246

Query: 242 IVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAGPAKV 301
           + N+KTQR  TCNT E+LL+ + +A S  P L   +   GV +        + +    + 
Sbjct: 247 LENSKTQRLGTCNTAESLLIARPVAVSLAPTLCAMLGRHGVAIR----GCEETRKLVPQA 302

Query: 302 VAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVDS 361
           +A   E++  E+L+  ++VKIV+D+ +AI HI  + +QH+D I+T +  NA RF+ EVDS
Sbjct: 303 IAATEEDWYAEYLAAIISVKIVADVGEAIEHINTYSSQHTDTIVTENYTNAMRFLREVDS 362

Query: 362 SAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDYTIRA 417
            +V VNASTRF DG ++GLGAE+ +ST K HARGP+GLE LT+ KWI +GD  +R+
Sbjct: 363 GSVMVNASTRFADGFEYGLGAEIGISTDKFHARGPVGLEGLTSQKWIVLGDGEVRS 418


Lambda     K      H
   0.317    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 424
Number of extensions: 15
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 418
Length adjustment: 32
Effective length of query: 385
Effective length of database: 386
Effective search space:   148610
Effective search space used:   148610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_041100688.1 SUTH_RS16085 (glutamate-5-semialdehyde dehydrogenase)
to HMM TIGR00407 (proA: glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41))

Software error:

../bin/blast/fastacmd -i /tmp/list.14778.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14778.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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