Alignments for a candidate for proB in Sulfuritalea hydrogenivorans DSM 22779

Align glutamate 5-kinase (EC 2.7.2.11) (characterized)
to candidate WP_041100488.1 SUTH_RS15450 glutamate 5-kinase

Query= BRENDA::P0A7B5
         (367 letters)



>NCBI__GCF_000828635.1:WP_041100488.1
          Length = 371

 Score =  296 bits (759), Expect = 5e-85
 Identities = 162/366 (44%), Positives = 232/366 (63%), Gaps = 2/366 (0%)

Query: 1   MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHL 60
           +++++ +VVK+G++++T   + L    I E  RQ A LHA G ++++V+SGAIAAG + L
Sbjct: 5   IAEARRVVVKVGSALVTNNGQGLALDFIAECARQIAALHADGRQVLLVSSGAIAAGMQRL 64

Query: 61  GYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDT 120
           G+   P  +   Q  AAVGQ  L Q +E  F  +G+   Q+LLT  D+ DR R+LNAR T
Sbjct: 65  GWTTRPHAMHDLQAAAAVGQMGLAQAYESTFLSHGLKAAQILLTHEDLADRTRYLNARST 124

Query: 121 LRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPR 180
           L+ LLD  +VP+INEND V T EIK GDND L AL A L  A+ L++LTDQKGLY+ADPR
Sbjct: 125 LQTLLDLAVVPIINENDTVVTDEIKFGDNDTLGALVANLVEAEALIILTDQKGLYSADPR 184

Query: 181 SNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPG 240
            +P A LI +    D    A+AG + SG+  GGM TK++AA  A ++G  T+I +G +P 
Sbjct: 185 LDPAATLISEGRADDRRFEAMAGGAGSGISKGGMITKVRAAQRAAKSGAHTLIVSGREPD 244

Query: 241 VIGDVMEGISVGTLFHAQATPLENRKRWIFG-APPAGEITVDEGATAAILERGSSLLPKG 299
            +     G ++GTL +A  +PL  RK+W+      AG +T+D GA  A L  G SLL  G
Sbjct: 245 SLLAAARGETIGTLLYAAESPLAARKQWLADHLQLAGALTLDAGAQTA-LAGGRSLLAVG 303

Query: 300 IKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAV 359
           +  V G+F RG  +   + +GR+IA G+  Y+S   RRIAGH +Q+I+A+LGY      +
Sbjct: 304 VVRVEGDFERGAAVACRSHDGREIARGLINYSSSEARRIAGHGTQDIEALLGYIDSAELI 363

Query: 360 HRDDMI 365
           HRD+++
Sbjct: 364 HRDNLV 369


Lambda     K      H
   0.318    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 346
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 371
Length adjustment: 30
Effective length of query: 337
Effective length of database: 341
Effective search space:   114917
Effective search space used:   114917
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_041100488.1 SUTH_RS15450 (glutamate 5-kinase)
to HMM TIGR01027 (proB: glutamate 5-kinase (EC 2.7.2.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.12961.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.12961.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.