Alignments for a candidate for proC in Sulfuritalea hydrogenivorans DSM 22779

Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate WP_041096474.1 SUTH_RS01310 pyrroline-5-carboxylate reductase

Query= SwissProt::P22008
         (273 letters)



>NCBI__GCF_000828635.1:WP_041096474.1
          Length = 270

 Score =  219 bits (557), Expect = 6e-62
 Identities = 123/271 (45%), Positives = 169/271 (62%), Gaps = 5/271 (1%)

Query: 5   RIAFIGAGNMAASLIGGLRAQGVPAAQIRASDPGAEQRAKIAGEFAIDVVESNAEAVADA 64
           +I FIG GNMA +LIGGLR QG  AA I+  +P  E R ++A  F +    +   A  + 
Sbjct: 2   KITFIGGGNMAVALIGGLRKQGFSAAAIQVVEPFQESRDRLAETFGVRCAAAVDAAALNC 61

Query: 65  DVVVLSVKPQAMKAVCQALAP--ALKPEQLIVSIAAGIPCASLEAWLGQPRPVVRCMPNT 122
           ++++L+VKPQ ++   +A+AP      +QL+VSIAAG+  A +  WLG  R VVR MPNT
Sbjct: 62  EILILAVKPQQLR---EAVAPIRGKLTDQLVVSIAAGLRMADISRWLGNYRKVVRTMPNT 118

Query: 123 PALLRQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAVSGSGPAYFFL 182
           PAL+  G +GL A+  V       A ++L AVG  +W+DDE ++DAVTAVSGSGPAY F 
Sbjct: 119 PALIGAGITGLCADPSVDLEGRTAAERILKAVGSTVWIDDETKMDAVTAVSGSGPAYVFY 178

Query: 183 LMQAMTDAGEKLGLSRETASRLTLQTALGAAQMALSSEVEPAELRRRVTSPNGTTEAAIK 242
            ++AM  A   LG +  +A +L ++T LGAA++A  S    + LR RVTS  GTTEAA+ 
Sbjct: 179 FLEAMEAAALNLGFAPGSARQLAVETFLGAARLAEQSSESISTLRERVTSKGGTTEAALL 238

Query: 243 SFQANGFEALVEQALNAASQRSAELAEQLGQ 273
           SF AN     +EQ + AA  R  EL + LG+
Sbjct: 239 SFGANDIAGAIEQGILAAEARGRELGDMLGK 269


Lambda     K      H
   0.315    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 183
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 270
Length adjustment: 25
Effective length of query: 248
Effective length of database: 245
Effective search space:    60760
Effective search space used:    60760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate WP_041096474.1 SUTH_RS01310 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.8140.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8140.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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