Align Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 (characterized)
to candidate WP_041101832.1 SUTH_RS06445 aspartate-semialdehyde dehydrogenase
Query= SwissProt::Q51344 (370 letters) >NCBI__GCF_000828635.1:WP_041101832.1 Length = 369 Score = 573 bits (1476), Expect = e-168 Identities = 279/368 (75%), Positives = 316/368 (85%) Query: 1 MKRVGLIGWRGMVGSVLMQRMLEERDFDLIEPVFFTTSNVGGQGPEVGKDIAPLKDAYSI 60 MKRVGL+GWRGMVGSVLMQRM EE DF LIEPVFFTTSN GG+ PE PLKDA +I Sbjct: 1 MKRVGLVGWRGMVGSVLMQRMREENDFALIEPVFFTTSNPGGKAPEFAVGAPPLKDAKNI 60 Query: 61 DELKTLDVILTCQGGDYTSEVFPKLREAGWQGYWIDAASSLRMEDDAVIVLDPVNRKVID 120 DELK LD+I++CQGGDYT++VFPKLRE GW+G+WIDAASSLRM+DD VI+LDPVN VI+ Sbjct: 61 DELKKLDIIISCQGGDYTNDVFPKLREGGWKGHWIDAASSLRMKDDTVIILDPVNLDVIE 120 Query: 121 QALDAGTRNYIGGNCTVSLMLMALGGLFDAGLVEWMSAMTYQAASGAGAQNMRELLKQMG 180 +L G RN+IGGNCTVSLM+MALGGLF AGL+EWM++MTYQAASGAGAQNMRELL QMG Sbjct: 121 ASLARGGRNWIGGNCTVSLMMMALGGLFKAGLIEWMTSMTYQAASGAGAQNMRELLTQMG 180 Query: 181 AAHASVADDLANPASAILDIDRKVAETLRSEAFPTEHFGAPLGGSLIPWIDKELPNGQSR 240 H V + L +PASAILDIDR+VA LR E+FPT +FG PL GSLIPWIDK+L NGQSR Sbjct: 181 ETHRVVKNLLDDPASAILDIDREVAGILRDESFPTANFGVPLAGSLIPWIDKDLGNGQSR 240 Query: 241 EEWKAQAETNKILARFKNPIPVDGICVRVGAMRCHSQALTIKLNKDVPLTDIEGLISQHN 300 EEWK QAETNKIL R PIPVDG+CVR+GAMRCHSQALTIKL +DVPL +I G+++ HN Sbjct: 241 EEWKGQAETNKILGRTATPIPVDGLCVRIGAMRCHSQALTIKLTRDVPLDEINGILAAHN 300 Query: 301 PWVKLVPNHREVSVRELTPAAVTGTLSVPVGRLRKLNMGSQYLGAFTVGDQLLWGAAEPL 360 WVK+VPN REV+++ELTP AVTGTLSVPVGRLRKL MG QYL AFTVGDQLLWGAAEPL Sbjct: 301 DWVKVVPNQREVTLKELTPTAVTGTLSVPVGRLRKLGMGPQYLSAFTVGDQLLWGAAEPL 360 Query: 361 RRMLRILL 368 RRMLR+LL Sbjct: 361 RRMLRLLL 368 Lambda K H 0.319 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 565 Number of extensions: 10 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 370 Length of database: 369 Length adjustment: 30 Effective length of query: 340 Effective length of database: 339 Effective search space: 115260 Effective search space used: 115260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate WP_041101832.1 SUTH_RS06445 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01745 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.8304.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8304.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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