Alignments for a candidate for thrC in Sulfuritalea hydrogenivorans DSM 22779

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate WP_041098315.1 SUTH_RS07545 threonine synthase

Query= BRENDA::Q2SWH9
         (483 letters)



>NCBI__GCF_000828635.1:WP_041098315.1
          Length = 474

 Score =  650 bits (1678), Expect = 0.0
 Identities = 337/480 (70%), Positives = 382/480 (79%), Gaps = 7/480 (1%)

Query: 1   MNYISTRGAGIGERHTFSDILLGGLAKDGGLYLPSEYPQVSADELARWRTLPYADLAFEI 60
           M YISTRG G  +   F DILLGGLA DGGLYLP  YPQV AD L  WR L YA+LAFEI
Sbjct: 1   MKYISTRGGG--KPQEFCDILLGGLAPDGGLYLPESYPQV-ADRLDEWRGLSYAELAFEI 57

Query: 61  LSKFCDDIAAADLRAITRRTYTADVYRHARRGGNAADITPLTTLGTENGAPVSLLELSNG 120
           LS +  DI AADL+AI  +TYT + YR +R    A DI PLTTL  +      LLELSNG
Sbjct: 58  LSLYITDIPAADLKAICDKTYTTETYRWSRDAAKARDIVPLTTLEPD----FHLLELSNG 113

Query: 121 PTLAFKDMAMQLLGNLFEYTLAKHGETLNILGATSGDTGSAAEYAMRGKEGVRVFMLSPH 180
           PTLAFKDMAMQLLGNLFEY L +  ET+NILGATSGDTGSAAEYAMRGK  VRVFMLSP 
Sbjct: 114 PTLAFKDMAMQLLGNLFEYVLDRRNETINILGATSGDTGSAAEYAMRGKHNVRVFMLSPE 173

Query: 181 KKMSAFQTAQMYSLQDPNIFNLAVNGVFDDCQDIVKAVSNDHAFKAQQKIGTVNSINWAR 240
            KMSAFQ AQMYSLQD NIFN+AV G+FDD QDIVKAVSND  FKA+ KIG VNSINWAR
Sbjct: 174 GKMSAFQRAQMYSLQDANIFNIAVRGMFDDAQDIVKAVSNDAGFKAKYKIGAVNSINWAR 233

Query: 241 VVAQVVYYFKGYFAATRSNDERVSFTVPSGNFGNVCAGHIARMMGLPIEKLVVATNENDV 300
           V AQ+VYYFKG+F AT SND++V+F VPSGNFGN+CAGHIARMMGLPI +LV+ATNENDV
Sbjct: 234 VAAQIVYYFKGWFEATTSNDQKVAFCVPSGNFGNICAGHIARMMGLPIAQLVLATNENDV 293

Query: 301 LDEFFRTGAYRVRSAQDTYHTSSPSMDISKASNFERFVFDLLGRDPARVVQLFRDVEQKG 360
           LDEFFRTG YR R+  +TY TSSPSMDISKASNFERFVFDL+GRDPA V QL+R+V+  G
Sbjct: 294 LDEFFRTGIYRPRATAETYVTSSPSMDISKASNFERFVFDLVGRDPAIVRQLWREVDGGG 353

Query: 361 GFDLAASGDFARVAEFGFVSGRSTHADRIATIRDVFERYRTMIDTHTADGLKVAREHLRP 420
            F+LA      R+ ++GFVSG S+HADR+ATIRDV++R+  MIDTHTADG+KVAREH   
Sbjct: 354 SFNLAEGPFATRLPDYGFVSGSSSHADRLATIRDVWQRHGLMIDTHTADGVKVAREHRVA 413

Query: 421 GVPMVVLETAQPIKFGESIREALGQEPSRPAAFDGLEALPQRFEVVDANAQQVKDFIAAH 480
           G+PM+VLETAQ +KF E+IREALG++P RP   DG+E LPQ+ EVVDA   QVKD I  H
Sbjct: 414 GLPMIVLETAQVVKFAETIREALGRDPVRPKELDGIENLPQKVEVVDAALDQVKDIIVRH 473


Lambda     K      H
   0.320    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 692
Number of extensions: 19
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 474
Length adjustment: 34
Effective length of query: 449
Effective length of database: 440
Effective search space:   197560
Effective search space used:   197560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_041098315.1 SUTH_RS07545 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.13458.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13458.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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