Alignments for a candidate for trpA in Sulfuritalea hydrogenivorans DSM 22779

Align Tryptophan synthase alpha chain; EC 4.2.1.20 (characterized, see rationale)
to candidate WP_041098011.1 SUTH_RS06475 tryptophan synthase subunit alpha

Query= uniprot:H0BV16
         (269 letters)



>NCBI__GCF_000828635.1:WP_041098011.1
          Length = 269

 Score =  310 bits (793), Expect = 3e-89
 Identities = 169/272 (62%), Positives = 201/272 (73%), Gaps = 12/272 (4%)

Query: 1   MSRIASTFSALQAQGRKALIPYVTAGFPFADITPALMHGMVEAGADVIELGVPFSDPMAD 60
           MSRI +TF+AL AQGRKALIP++TAG P  D+   LM  +V  GAD+IELGVPFSDPMAD
Sbjct: 1   MSRIQTTFAALAAQGRKALIPFITAGDPHPDLGLPLMRALVAGGADIIELGVPFSDPMAD 60

Query: 61  GPVIQKAGEKALSLGIGMVQVLDHVREFRKRNNTTPVVLMGYANPVERYDQKHGEGAFVR 120
           GP IQ+A E+AL+ G+ + +VL  V+EFRK N TTPVVLMGYANPVE Y    G  AF R
Sbjct: 61  GPTIQRASERALAHGMSLRRVLALVQEFRKENATTPVVLMGYANPVEAY----GIEAFAR 116

Query: 121 DSAAAGVDGVLIVDYPPEECEAFAASLRAHGMDLIFLLAPTSTDERMAEVARVASGYVYY 180
           D+  AGVDGVL+VDYPPEEC  FAA ++   +D IFLLAPTST++R  EV ++ SGY+YY
Sbjct: 117 DAREAGVDGVLVVDYPPEECVGFAAVMKRADIDPIFLLAPTSTEQRYDEVGQIGSGYIYY 176

Query: 181 VSLKGVTGSGALDTAAVEQMLPRIRQHVTIPVGVGFGIRDAATAQAIGKVADAVVIGSRI 240
           VSLKGVTGSG LD   V + +P IR+ V +PVGVGFGIRD ATA  I  VADAVVIGSRI
Sbjct: 177 VSLKGVTGSGNLDLDEVARRIPLIRERVGMPVGVGFGIRDGATAARIAAVADAVVIGSRI 236

Query: 241 IQLIE----DQEHAKVVPLTIDFLRGIRKALD 268
           I+ IE    D+  A+V  L    L GIR A+D
Sbjct: 237 IEEIEQGPADESPARVAKL----LAGIRAAMD 264


Lambda     K      H
   0.321    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 284
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 269
Length adjustment: 25
Effective length of query: 244
Effective length of database: 244
Effective search space:    59536
Effective search space used:    59536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate WP_041098011.1 SUTH_RS06475 (tryptophan synthase subunit alpha)
to HMM TIGR00262 (trpA: tryptophan synthase, alpha subunit (EC 4.2.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.4749.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4749.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.