Alignments for a candidate for trpB in Sulfuritalea hydrogenivorans DSM 22779

Align Tryptophan synthase beta chain 1; EC 4.2.1.20 (characterized, see rationale)
to candidate WP_041098009.1 SUTH_RS06470 tryptophan synthase subunit beta

Query= uniprot:P50383
         (425 letters)



>NCBI__GCF_000828635.1:WP_041098009.1
          Length = 401

 Score =  127 bits (320), Expect = 5e-34
 Identities = 112/350 (32%), Positives = 164/350 (46%), Gaps = 28/350 (8%)

Query: 72  IGRPTPLFRAKRLEEYLKTPARIYFKYEGATPTGSHKINTAIPQAYFAKEEGIEHVVTET 131
           +GRP+P++ AKR    L   A+IY K E    TG+HKIN  I QA  A+  G   V+ ET
Sbjct: 59  VGRPSPIYHAKRWSGLLGG-AQIYLKREDLNHTGAHKINNCIGQALLARRMGKPRVIAET 117

Query: 132 GAGQWGTAVALAASMYNMKSTIFMVKVSYEQKPMRRSIMQLYGANVYASPTNLTEYGRKI 191
           GAGQ G A A  A+ Y M+  ++M      ++      M+L GA V        E G K 
Sbjct: 118 GAGQHGVATATVAARYGMECVVYMGSEDVRRQAANVYRMKLLGAKVVP-----VESGSKT 172

Query: 192 LETNPQHPGSLGIAMSEAIEYALKNEFRYLVGSVLD------VVLLHQSVIGQETITQL- 244
           L+       +L  AM + +   + N F Y++G+V        +V   Q+VIG+E  TQ+ 
Sbjct: 173 LK------DALNEAMRDWVT-NIGNTF-YIIGTVAGPHPYPMMVRDFQAVIGEECKTQMP 224

Query: 245 DLLGEDADILIGCVGGGSNFGGFTYPFIGNKKGKRYIAVSSAEIPKFSKGEYKYDFPDSA 304
           +L G   D +I CVGGGSN  G  YP+I    G + I V +A     S           +
Sbjct: 225 ELAGRQPDAVIACVGGGSNAMGIFYPYI-PVAGVKLIGVEAAGHGLDSGKHSASLTAGRS 283

Query: 305 GLLPLVKMITLGKD---YVPPPIYAGGLRYHGVAPTLSLLTKEGIVEWREYNEREIFEAA 361
           G+L   +   L  +    +     + GL Y GV P  + L      ++    + E  +A 
Sbjct: 284 GVLHGNRTYLLQDENGQVIETHSISAGLDYPGVGPEHAWLKDSARADYVTITDGEALQAF 343

Query: 362 KIFIENQGIVPAPESAHAIRAVVDEAIEARKNNERKVIVFNLSGHGLLDL 411
                 +GI+PA ES+HA+      A    K+   K+++ NLSG G  D+
Sbjct: 344 HDLCHFEGIIPALESSHALAYAAKLAPTLPKD---KLLLVNLSGRGDKDM 390


Lambda     K      H
   0.318    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 383
Number of extensions: 20
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 401
Length adjustment: 31
Effective length of query: 394
Effective length of database: 370
Effective search space:   145780
Effective search space used:   145780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_041098009.1 SUTH_RS06470 (tryptophan synthase subunit beta)
to HMM TIGR00263 (trpB: tryptophan synthase, beta subunit (EC 4.2.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.19613.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19613.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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