Alignments for a candidate for trpD_2 in Sulfuritalea hydrogenivorans DSM 22779

Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (characterized)
to candidate WP_041100203.1 SUTH_RS14345 anthranilate phosphoribosyltransferase

Query= SwissProt::Q8PD71
         (345 letters)



>NCBI__GCF_000828635.1:WP_041100203.1
          Length = 345

 Score =  479 bits (1233), Expect = e-140
 Identities = 242/342 (70%), Positives = 283/342 (82%), Gaps = 4/342 (1%)

Query: 3   ITPQQALQRTIEHREIFHDEMVDLMRQIMRGEVSDAMVSAILTGLRVKKETIGEIAGAAT 62
           ITPQ+ALQRTIEHREIFHDEM+ LMRQIM+GE++  MV+AILTGLRVKKETIGEI+ AA 
Sbjct: 2   ITPQEALQRTIEHREIFHDEMLHLMRQIMKGEITPLMVAAILTGLRVKKETIGEISAAAM 61

Query: 63  VMREFSRRVE----VTDRRHMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSV 118
           VMRE S +V+       R   VDIVGTGGDG+HTFNIST +MFVAAA GA VAKHGNRSV
Sbjct: 62  VMRELSTKVDRPHDEQKRAQFVDIVGTGGDGAHTFNISTASMFVAAAAGATVAKHGNRSV 121

Query: 119 SSKSGSADALEALGAVIELQPEQVAASLAQTGIGFMYAPVHHPAMKVVAPVRREMGVRTI 178
           SSKSGSAD LEALGA I+L P+QV   +   G GFM+AP HHPAMK VAPVRREM VRTI
Sbjct: 122 SSKSGSADVLEALGAKIDLAPQQVGECIETIGCGFMFAPNHHPAMKNVAPVRREMAVRTI 181

Query: 179 FNILGPLTNPAGSPNILMGVFHPDLVGIQARVLQELGAERALVVWGRDGMDELSLGAGTL 238
           FNILGPLTNPAG+PN LMGVFHPDLVGIQ RV+Q+LGA   LVVWG+DGMDE+SLGA TL
Sbjct: 182 FNILGPLTNPAGAPNTLMGVFHPDLVGIQVRVMQQLGANHVLVVWGKDGMDEISLGAATL 241

Query: 239 VGELRDGQVHEYEVHPEDFGIAMSASRNLKVADAAESRAMLLQVLDNVPGPALDIVALNA 298
           VGEL+DG++ EYE+HPEDFG+AM ++R+L+VADA ES+AML++ L+N PG   +IV LNA
Sbjct: 242 VGELKDGKITEYEIHPEDFGLAMVSNRSLRVADATESKAMLIEALENTPGTPREIVTLNA 301

Query: 299 GAALYVAGVADSIADGIVRARQVLADGSARACLDAYVAFTQQ 340
           GAALY A  ADSI  GI +AR+ +A G+AR  LD +VAFT++
Sbjct: 302 GAALYTANRADSIGAGIAKAREAIASGAARKKLDEFVAFTRK 343


Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 436
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 345
Length adjustment: 29
Effective length of query: 316
Effective length of database: 316
Effective search space:    99856
Effective search space used:    99856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_041100203.1 SUTH_RS14345 (anthranilate phosphoribosyltransferase)
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.16350.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16350.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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