Alignments for a candidate for cmutase in Sulfuritalea hydrogenivorans DSM 22779

Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate WP_041098943.1 SUTH_RS09880 prephenate dehydratase

Query= SwissProt::P27603
         (365 letters)



>NCBI__GCF_000828635.1:WP_041098943.1
          Length = 360

 Score =  349 bits (895), Expect = e-101
 Identities = 176/365 (48%), Positives = 247/365 (67%), Gaps = 12/365 (3%)

Query: 3   EADQLKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWVLK 62
           ++ +L  LR  ID++D  +L LI+ERA+ A+ +  +K  +         YRPEREA VL+
Sbjct: 4   DSHELGQLRDGIDAIDGDLLRLINERAKLARRIGEIKQGN--------IYRPEREAQVLR 55

Query: 63  HIMELNKGPLDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVISK 122
            + E N GPL      R+ RE+MS+CLALEQPL +AYLGP GT+S++AA KHFG +    
Sbjct: 56  RVAERNPGPLSAAAAQRIVREVMSACLALEQPLTIAYLGPAGTYSESAARKHFGGAPTLL 115

Query: 123 PMAAIDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHLLV 182
           P  AID+VFR + +G  ++GVVP+ENSTEGA+  +LD  L   + ICGE+ L IHH+L+ 
Sbjct: 116 PCPAIDDVFRVIESGNAHYGVVPIENSTEGAIGRSLDLLLSSPLQICGEINLPIHHNLMT 175

Query: 183 GETTKTDRITRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIAGD 242
              T  D +TRIYSHAQSLAQC +WL+ + P V RV V+SNA+AA+    E  +AA+AGD
Sbjct: 176 RCATLAD-VTRIYSHAQSLAQCHEWLNRNLPLVPRVPVASNAEAARLAAGEAGAAAVAGD 234

Query: 243 MAAQLYGLSKLAEKIEDRPVNSTRFLIIGSQEVPPTGDDKTSIIVSMRNKPGALHELLMP 302
            AA+LY L  +A  IED P N+TRF+I+   +   +G D+TS++ S +N+PGA+++LL P
Sbjct: 235 AAAELYALPIIAASIEDDPNNTTRFVIVAEHDAGVSGSDRTSLVCSAQNRPGAVYQLLAP 294

Query: 303 FHSNGIDLTRIETRPSR---SGKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGS 359
           F  NG+ ++R+E+RP+R     +W YVF+ID  GH  +P +   LE++ H A  +K LGS
Sbjct: 295 FADNGVSMSRLESRPARGFGGSRWEYVFYIDIEGHRSEPAVARALEELRHRAGFVKELGS 354

Query: 360 YPKAV 364
           YPKAV
Sbjct: 355 YPKAV 359


Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 345
Number of extensions: 7
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 360
Length adjustment: 29
Effective length of query: 336
Effective length of database: 331
Effective search space:   111216
Effective search space used:   111216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_041098943.1 SUTH_RS09880 (prephenate dehydratase)
to HMM TIGR01807 (pheA: chorismate mutase (EC 5.4.99.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.27672.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27672.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.