Alignments for a candidate for ilvE in Sulfuritalea hydrogenivorans DSM 22779

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate WP_041097288.1 SUTH_RS04050 branched-chain amino acid transaminase

Query= reanno::BFirm:BPHYT_RS16285
         (307 letters)



>NCBI__GCF_000828635.1:WP_041097288.1
          Length = 306

 Score =  442 bits (1138), Expect = e-129
 Identities = 214/307 (69%), Positives = 255/307 (83%), Gaps = 1/307 (0%)

Query: 1   MSMADRDGKIWMDGKLIDWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLQEHT 60
           MSMADRDG IW DGKL+ WRDA  HVLTH+LHYG+ VFEGVRAYKT  G TAIFRL+EHT
Sbjct: 1   MSMADRDGFIWYDGKLVPWRDATTHVLTHSLHYGLAVFEGVRAYKTVSG-TAIFRLKEHT 59

Query: 61  KRLLNSAKIFQMDVPFDHETLAAAQCEVVRENKLESCYLRPIIWVGSEKLGVSAKGNTIH 120
            RL NSA I++M +P+D  TL  A  EVVR NKLESCYLRPI + GSEK+GVS +G   H
Sbjct: 60  DRLFNSAHIYRMPMPYDKATLIEAHKEVVRSNKLESCYLRPIAFYGSEKMGVSPRGAATH 119

Query: 121 VAIAAWPWGAYLGEDGIAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADG 180
           V+IAAWPWGAYLGE+G+ KGIRVKTSS++RHHVNV+M RAK +G Y NSILAN EA  DG
Sbjct: 120 VSIAAWPWGAYLGEEGMEKGIRVKTSSYSRHHVNVNMARAKFAGTYANSILANMEATEDG 179

Query: 181 YDEALLLDVDGYVSEGSGENFFLVNNGKLYTPDLSSCLDGITRDTVITLARDAGIQVIEK 240
           YDEALLLDVDG+V+EG+GEN F++ +G +Y P+++S L GITR+TVITLA + G QVI K
Sbjct: 180 YDEALLLDVDGFVAEGAGENLFVIKDGVIYEPEIASALMGITRNTVITLAAELGYQVIAK 239

Query: 241 RITRDEVYTCDEAFFTGTAAEVTPIRELDNRTIGSGARGPITEKLQSGFFDIVNGKSDKY 300
           R+TRD++Y  DEAFFTGTAAEVTPIRELDNRTIG+G+RGPIT+K+QS FFD+VNGK   +
Sbjct: 240 RLTRDDIYIADEAFFTGTAAEVTPIRELDNRTIGAGSRGPITQKIQSLFFDVVNGKVPAH 299

Query: 301 ANWLTKI 307
            +WL+ I
Sbjct: 300 KDWLSYI 306


Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 386
Number of extensions: 6
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 306
Length adjustment: 27
Effective length of query: 280
Effective length of database: 279
Effective search space:    78120
Effective search space used:    78120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_041097288.1 SUTH_RS04050 (branched-chain amino acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.1404.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.1404.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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