Alignments for a candidate for argB in Stenotrophomonas chelatiphaga DSM 21508

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate WP_057687251.1 ABB28_RS15375 acetylglutamate kinase

Query= BRENDA::A0A0H2X8L7
         (447 letters)



>NCBI__GCF_001431535.1:WP_057687251.1
          Length = 442

 Score =  743 bits (1919), Expect = 0.0
 Identities = 382/447 (85%), Positives = 407/447 (91%), Gaps = 5/447 (1%)

Query: 1   MSLPAQPHKQTRQTIVRLLSSMASAKEISQYLKRFSQLDAKRFAVVKVGGAVLRDDLEAL 60
           MS   QPH+QTRQTIVRLLSSMASAKEISQYLKRFSQLDAKRFAVVKVGGAVLRDDLEAL
Sbjct: 1   MSPALQPHRQTRQTIVRLLSSMASAKEISQYLKRFSQLDAKRFAVVKVGGAVLRDDLEAL 60

Query: 61  TSSLSFLQEVGLTPIVLHGAGPQLDAELSAAGIEKQTVNGLRVTSPHALAIVRKVFQASN 120
           TSSLSFLQEVGLTPIVLHGAGPQLD EL+AAGIEKQTVNGLRVTSP ALAIVR+VFQ SN
Sbjct: 61  TSSLSFLQEVGLTPIVLHGAGPQLDTELAAAGIEKQTVNGLRVTSPEALAIVRQVFQQSN 120

Query: 121 LKLVEALQQNGARATSITGGVFEAEYLNRDTYGLVGEVKAVNLAPIEASLQAGSIPVITS 180
           L+LVEALQQNGARATSITGGVFEAEY+++ TYGLVGEVK VNLAPIEASL+AGSIPVITS
Sbjct: 121 LRLVEALQQNGARATSITGGVFEAEYMDQATYGLVGEVKKVNLAPIEASLRAGSIPVITS 180

Query: 181 LGETPSGQILNVNADFAANELVQELQPYKIIFLTGTGGLLDAEGKLIDSINLSTEYDHLM 240
           LGET SGQILNVNADFAANELVQELQPYKIIFLTGTGGLLD EGK+IDSINLSTEY+HLM
Sbjct: 181 LGETRSGQILNVNADFAANELVQELQPYKIIFLTGTGGLLDEEGKVIDSINLSTEYEHLM 240

Query: 241 QQPWINGGMRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRRGERVLRA 300
            QPWI+GGM+VKIEQIK LLDRLPLESSVSITRPADLAKELFTHKGSGTLVR+GERVLRA
Sbjct: 241 TQPWIHGGMKVKIEQIKSLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRKGERVLRA 300

Query: 301 TSWDELDLPRLTSLIESSFGRTLVPDYFSNTKLLRAYVSENYRAAVILTDEGMLGASALI 360
           TSWDELDLPRL  LIESSFGR LVPDYF  T+LLRAYVSENYR AVILTDE     +  +
Sbjct: 301 TSWDELDLPRLRGLIESSFGRVLVPDYFDKTRLLRAYVSENYRTAVILTDE-----AEGV 355

Query: 361 YLDKFAVLDDAQGEGLGRAVWNVMREETPQLFWRSRHNNQVNIFYYAESDGCIKQEKWKV 420
           YLDKFAVLDDAQGEGLGRAVWNVM +ETPQLFWRSR+ N +N FYYAESDGC KQ  WK 
Sbjct: 356 YLDKFAVLDDAQGEGLGRAVWNVMLDETPQLFWRSRNGNPINHFYYAESDGCYKQGTWKT 415

Query: 421 FWYGLENFEQIQHCVAHCATRQPTLLG 447
           FW+G + F++I+  V HCA R P+LLG
Sbjct: 416 FWFGADGFDRIKAYVDHCAQRAPSLLG 442


Lambda     K      H
   0.318    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 709
Number of extensions: 13
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 442
Length adjustment: 32
Effective length of query: 415
Effective length of database: 410
Effective search space:   170150
Effective search space used:   170150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_057687251.1 ABB28_RS15375 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.22572.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22572.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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