Alignments for a candidate for argH in Stenotrophomonas chelatiphaga DSM 21508

Align arginosuccinate lyase (EC 4.3.2.1) (characterized)
to candidate WP_057687279.1 ABB28_RS15360 argininosuccinate lyase

Query= reanno::Dyella79:N515DRAFT_3770
         (433 letters)



>NCBI__GCF_001431535.1:WP_057687279.1
          Length = 431

 Score =  627 bits (1617), Expect = 0.0
 Identities = 317/430 (73%), Positives = 361/430 (83%), Gaps = 1/430 (0%)

Query: 1   MTQPLWQKSGIQIDARIMRFLAGDDVVLDREFFLHDITASKAHVEGLAKIGVVSADEAAA 60
           M   LWQK G+ +DA+I  FLAGDDV+LDREFFLHDI AS AH EGLA IG++SADE A 
Sbjct: 1   MADLLWQKPGVAVDAKIQTFLAGDDVILDREFFLHDIAASAAHAEGLAHIGILSADELAG 60

Query: 61  LKRELDALAADFSAGDFVLDESYEDGHSAIEARLTERLGDAGRRVHTGRSRNDQILVATR 120
           L+REL+ LA DF AG FVLDE YEDGHSAIEARLT+RLGDAGRR+HTGRSRNDQ+LVATR
Sbjct: 61  LQRELEVLADDFRAGRFVLDEQYEDGHSAIEARLTDRLGDAGRRIHTGRSRNDQVLVATR 120

Query: 121 LWLKDQLAVLETHCRAIAEVCLERA-AQPALPLPGYTHIQRAVVSSTAMWFAGFAEGFID 179
           LWLK++L  +      IA+V L+RA A+  LP+PGYTHIQRAVVSS  MW+AG+AE FID
Sbjct: 121 LWLKEKLQRVAQLSAEIAKVALDRADAEKDLPIPGYTHIQRAVVSSAGMWWAGWAEAFID 180

Query: 180 NTLRARQTAALIDCNPLGTAAGYGVNLPLDREHTTQALGFARMQVSPVYAQLSRGKFEMA 239
           N +RAR T AL+D NPLGTAAGYGVNLPLDREHTT ALGFARMQVSP+YAQLSRGKFEMA
Sbjct: 181 NAIRARDTHALVDANPLGTAAGYGVNLPLDREHTTAALGFARMQVSPIYAQLSRGKFEMA 240

Query: 240 VLEAIAAALLDVRRLAWDLSLFTTAEFGFVKLPSEYTTGSSIMPNKRNPDVVELLRASYA 299
            LEA+  A LD+RR+AWDLSLFT+AEFGFV LP++YTTGSSIMPNKRNPDV+EL+RA++A
Sbjct: 241 ALEALGGATLDLRRIAWDLSLFTSAEFGFVALPAQYTTGSSIMPNKRNPDVIELMRATHA 300

Query: 300 SVAAARTEIEQLLSLPSGYQRDLQFSKGSLFHGCRHGLAALELVPDLLARMEWHEPAMRA 359
           SVAAARTEIEQLLSLPSGY RDLQ SKG++FHG   GLAALEL+P LLA +EW    + A
Sbjct: 301 SVAAARTEIEQLLSLPSGYHRDLQGSKGAIFHGFGRGLAALELLPALLANLEWRNDKLLA 360

Query: 360 AIEPAMYATDVAIEQAAAGVPFRDAYRAAADAAASAGAGRTPEGSLAARVSPGAGHDLRL 419
            I+  MYATDVA+E A AGVPFR+AY+AAA  A +AG GRTPEGSLAARVSPGA  DLRL
Sbjct: 361 GIDSGMYATDVAVEAAVAGVPFREAYKAAAAGADTAGQGRTPEGSLAARVSPGAAADLRL 420

Query: 420 DELKARLAAL 429
           D L+AR  AL
Sbjct: 421 DVLRARWQAL 430


Lambda     K      H
   0.320    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 639
Number of extensions: 19
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 431
Length adjustment: 32
Effective length of query: 401
Effective length of database: 399
Effective search space:   159999
Effective search space used:   159999
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)

Align candidate WP_057687279.1 ABB28_RS15360 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.27992.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27992.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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