Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_057509125.1 ABB28_RS13565 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>NCBI__GCF_001431535.1:WP_057509125.1
Length = 1080
Score = 1475 bits (3818), Expect = 0.0
Identities = 756/1079 (70%), Positives = 883/1079 (81%), Gaps = 8/1079 (0%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
M KRTD+K+ILI+GAGPIVIGQACEFDYSGAQACKALR+EGYRV+LVNSNPATIMTDPEM
Sbjct: 1 MAKRTDLKTILIIGAGPIVIGQACEFDYSGAQACKALRDEGYRVVLVNSNPATIMTDPEM 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
ADA YIEPI+W+ V KII KE+PDA+LPTMGGQTALNCAL+L GVLE++ V +IGA
Sbjct: 61 ADAVYIEPINWQTVEKIIAKEKPDALLPTMGGQTALNCALDLADNGVLEKYNVELIGAKR 120
Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
+AI AEDR F VAM +IGLE + +AHT+EEAL + VG+P IIRPSFT+GGSGGG
Sbjct: 121 EAIRMAEDRELFRVAMGEIGLECPSAAVAHTLEEALDIQTRVGYPTIIRPSFTLGGSGGG 180
Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
IAYNREE +I RGL+LSPT E+L++ES++GWKE+EMEVVRD DNCIIVCSIEN D M
Sbjct: 181 IAYNREELIDIVTRGLELSPTTEVLVEESVLGWKEFEMEVVRDTADNCIIVCSIENLDPM 240
Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
G+HTGDSITVAPAQTLTDKEYQ +R+AS+AVLR+IGV+TGGSNVQF +NP GR++VIEM
Sbjct: 241 GVHTGDSITVAPAQTLTDKEYQRLRDASIAVLRKIGVDTGGSNVQFGINPHTGRVVVIEM 300
Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360
NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDEL N+ITGG TPASFEPSIDYVVTKIP
Sbjct: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELKNEITGGLTPASFEPSIDYVVTKIP 360
Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDP-KVSLDDPE 419
RF FEKF A+ RLTTQMKSVGEVMA+GRT QES+QKALRGLE G GFDP ++ L + +
Sbjct: 361 RFAFEKFPAADARLTTQMKSVGEVMAMGRTFQESMQKALRGLETGKVGFDPTELDLGNED 420
Query: 420 ALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEV 479
+ +RRELK G +R++Y+AD FRAG+SV+ + L+ ID WFL QIEE++ E +VA
Sbjct: 421 DMQTLRRELKAPGPERLFYVADGFRAGMSVEEIHALSFIDPWFLDQIEEIITAEGEVAAG 480
Query: 480 GITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATD 539
GI L+A LR+LKR GF+DARLA+L G EA +R LR + + PVYKRVD+CA EFAT
Sbjct: 481 GIDSLDAARLRKLKRAGFSDARLAQLTGTNEAAVRALRRAHKVRPVYKRVDSCAGEFATG 540
Query: 540 TAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMV 599
TAY+YSTYE+ECEA PS +R+KIM+LGGGPNRIGQGIEFDYCCVHA+LALREDGYETIMV
Sbjct: 541 TAYLYSTYEDECEAAPS-NRDKIMILGGGPNRIGQGIEFDYCCVHAALALREDGYETIMV 599
Query: 600 NCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGV 659
NCNPETVSTDYDTSDRLYFEP+TLEDVLEIV +E+PKGVIVQYGGQTPLKLARALEA GV
Sbjct: 600 NCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEQPKGVIVQYGGQTPLKLARALEANGV 659
Query: 660 PVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYV 719
PVIGTSPD+ID AEDRERFQ V+ L LKQP N + A+ A+EIGYPLVVRPSYV
Sbjct: 660 PVIGTSPDSIDLAEDRERFQQLVDNLGLKQPPNRIARNDQEALLLAREIGYPLVVRPSYV 719
Query: 720 LGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGE-MVLIGGI 778
LGGRAMEIVY E+DL RY + AV VSND+PVLLD FLD+AVEVDVD I D + VLIGG+
Sbjct: 720 LGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADSQGNVLIGGV 779
Query: 779 MEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNE-- 836
MEHIE+AGVHSGDS+CSLP Y+LS E Q +R+QV +LA L V GLMN QFA++ E
Sbjct: 780 MEHIEEAGVHSGDSSCSLPPYSLSAETQAELRRQVVELAKALNVVGLMNTQFAIQAGENG 839
Query: 837 ---VYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEV 893
VYL+EVNPRA+RTVPFVSKATG+PLAK+AAR MAGK+LAEQG TKE++P YYSVKE
Sbjct: 840 EDIVYLLEVNPRASRTVPFVSKATGMPLAKIAARCMAGKTLAEQGATKEIVPDYYSVKEA 899
Query: 894 VLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGD 953
+ PF KF GVDP+LGPEMRSTGEVMGVGR+F+ AFA+AQ G+A +SVR+ D
Sbjct: 900 IFPFAKFQGVDPILGPEMRSTGEVMGVGRSFSAAFARAQEAGGIKAPPVGKAFVSVRDPD 959
Query: 954 KERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYI 1013
K+RV+ +A LL +G+ L AT GTA L + G+ +VNKV EGRPHI DRIKNGE YI
Sbjct: 960 KQRVLPVAEALLAKGYSLVATRGTAAWLQQHGMECEIVNKVVEGRPHIVDRIKNGEIVYI 1019
Query: 1014 INTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQI 1072
+NTT GR AI DS IRR ALQ++V Y TT+ G A +L T V S+QE+H ++
Sbjct: 1020 VNTTEGRAAINDSFSIRREALQHRVTYSTTIAGAKALVHSLEFRGTGPVWSLQELHKEL 1078
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3123
Number of extensions: 120
Number of successful extensions: 14
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1073
Length of database: 1080
Length adjustment: 46
Effective length of query: 1027
Effective length of database: 1034
Effective search space: 1061918
Effective search space used: 1061918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_057509125.1 ABB28_RS13565 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.26761.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26761.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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