Alignments for a candidate for asnB in Stenotrophomonas chelatiphaga DSM 21508

Align asparagine synthetase B, glutamine-hydrolyzing; EC 6.3.5.4 (characterized)
to candidate WP_057507873.1 ABB28_RS06540 asparagine synthase B

Query= CharProtDB::CH_002444
         (554 letters)



>NCBI__GCF_001431535.1:WP_057507873.1
          Length = 563

 Score =  671 bits (1732), Expect = 0.0
 Identities = 336/561 (59%), Positives = 410/561 (73%), Gaps = 9/561 (1%)

Query: 1   MCSIFGVFDIKT--DAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNA 58
           MCSIFG+F ++   D   LR+ ALE S+  RHRGPDWSG+Y  D A+L HERL+IVD   
Sbjct: 1   MCSIFGIFGLQAGDDLPALRRHALESSQRQRHRGPDWSGVYLDDGALLVHERLAIVDPAG 60

Query: 59  GAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKGP-EFLDD 117
           G+QPL ++     LAVNGEIYNHQ L+A     Y FQTGSDCEVI ALY++  P ++L+ 
Sbjct: 61  GSQPLLSEDGGLALAVNGEIYNHQQLKAGLDQPYAFQTGSDCEVINALYRQGEPSQWLER 120

Query: 118 LQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPA 177
           L G+FAFAL+D      L+ RD +G++PLY G+D  G+L VASE+KALV  C    +FP 
Sbjct: 121 LNGIFAFALWDKAAGRVLVARDPIGVVPLYWGHDAQGRLRVASELKALVDTCADAAQFPP 180

Query: 178 GSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGG 237
           G Y  S  G +  YY + W +YDAV+    D  ELR+A E +V+  LMSDVPYGVLLSGG
Sbjct: 181 GHYYDSATGALVRYYQQSWREYDAVQGKPVDLAELREAFERAVERQLMSDVPYGVLLSGG 240

Query: 238 LDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHE 297
           LDSS+++A+  +YA RR+ED   SEAWWP+LHSFA+GL GSPDL AA   A  LGTVHH 
Sbjct: 241 LDSSLVAAVAARYARRRIEDGGESEAWWPRLHSFAIGLKGSPDLAAAAIAAEALGTVHHG 300

Query: 298 IHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGG 357
             +T +EGLD + +VI HIETYDVTTIRASTPM+L++R+IKAMG+KMVLSGEGSDE+FGG
Sbjct: 301 FEYTFEEGLDVLPEVIRHIETYDVTTIRASTPMFLLARRIKAMGVKMVLSGEGSDEIFGG 360

Query: 358 YLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRIN 417
           YLYFHKAP+A+E H E VRKL ALH YDC RANK+M AWGVE RVPFLD++FLDVAMR +
Sbjct: 361 YLYFHKAPDAREFHSELVRKLDALHNYDCLRANKSMMAWGVEPRVPFLDREFLDVAMRFD 420

Query: 418 PQDKMCGN-----GKMEKHILRECFEAYLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQ 472
              KM G+      ++EK +LR  FE YLP S+ WRQKEQFSDGVGY WID LK  A  Q
Sbjct: 421 AAHKMVGSEASGGRRVEKGVLRAAFEGYLPESILWRQKEQFSDGVGYGWIDGLKAHAEAQ 480

Query: 473 VSDQQLETARFRFPYNTPTSKEAYLYREIFEELFPLPSAAECVPGGPSVACSSAKAIEWD 532
           VSD+ L  A  RFP+N P +KEAY YR +FE+ FP  +AAE VPGG S+ACSS  AI WD
Sbjct: 481 VSDRVLAAADKRFPHNPPQTKEAYYYRHVFEQYFPSHAAAETVPGGKSIACSSPAAIAWD 540

Query: 533 EAFKKMDDPSGRAV-GVHQSA 552
            +F    DPSGRA+ GVH++A
Sbjct: 541 ASFAAAADPSGRAIAGVHEAA 561


Lambda     K      H
   0.319    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 932
Number of extensions: 30
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 563
Length adjustment: 36
Effective length of query: 518
Effective length of database: 527
Effective search space:   272986
Effective search space used:   272986
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)

Align candidate WP_057507873.1 ABB28_RS06540 (asparagine synthase B)
to HMM TIGR01536 (asnB: asparagine synthase (glutamine-hydrolyzing) (EC 6.3.5.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.26028.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26028.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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