Alignments for a candidate for aroB in Stenotrophomonas chelatiphaga DSM 21508

Align 3-dehydroquinate synthase (EC 4.2.3.4) (characterized)
to candidate WP_057508721.1 ABB28_RS11280 3-dehydroquinate synthase

Query= BRENDA::P07639
         (362 letters)



>NCBI__GCF_001431535.1:WP_057508721.1
          Length = 370

 Score =  291 bits (745), Expect = 2e-83
 Identities = 171/356 (48%), Positives = 217/356 (60%), Gaps = 7/356 (1%)

Query: 9   GERSYPITIASGLFNEPASFLPLKSGEQVMLVTNETLAPLYLDKVRGVLEQAGVN--VDS 66
           GE  Y ITI  G   +  +      G  V+LV++  +APLYL  VR  L QA  +  +  
Sbjct: 13  GEHPYSITIGPGQLADGHALARHVRGRHVLLVSDSEVAPLYLAGVRAALLQARPDLLIGE 72

Query: 67  VILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVALGGGVVGDLTGFAAASYQRGVRFIQ 126
            +LP GE  K+LA       AL      RD  ++ALGGGVVGDL+GFAAA + RGV  +Q
Sbjct: 73  HVLPAGEASKTLAEFGRAIEALAALGATRDACVLALGGGVVGDLSGFAAACWMRGVDCVQ 132

Query: 127 VPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPASVVVDLDCLKTLPPRELASGLAEVI 186
           +PTTLL+ VDSSVGGKTAV+   GKN++GAF+ P +V+ D   L TLP REL +GLAEV+
Sbjct: 133 LPTTLLAMVDSSVGGKTAVDIAAGKNLVGAFHPPRAVIADTQVLSTLPVRELRAGLAEVV 192

Query: 187 KYGIILDGAFFNWLEENLDALLRLDGPAMAYCIRRCCELKAEVVAADERETGLRALLNLG 246
           KYG + D  FF+WL+ +   L   D   +A  I R C  KA +VA D  E G RALLNLG
Sbjct: 193 KYGALGDPEFFDWLQRHAQGLSAGDSALLAEAIARSCAHKAAIVARDPLEKGERALLNLG 252

Query: 247 HTFGHAIEAEMGYG-----NWLHGEAVAAGMVMAARTSERLGQFSSAETQRIITLLKRAG 301
           HTFGHAIE E GY         HGEAVA GMV+AAR S  L +  +A+  R++ LL+   
Sbjct: 253 HTFGHAIETEQGYAAPGRDALNHGEAVAVGMVLAARLSTALDRAPAADADRLVALLQSLQ 312

Query: 302 LPVNGPREMSAQAYLPHMLRDKKVLAGEMRLILPLAIGKSEVRSGVSHELVLNAIA 357
           LPV  P  ++ QA L  M  DKK +AG +RL+L   IGK+EV + V  E VL  +A
Sbjct: 313 LPVAIPAGLAPQALLERMRLDKKNVAGRLRLVLWRGIGKAEVVADVHDEAVLAVLA 368


Lambda     K      H
   0.320    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 331
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 370
Length adjustment: 30
Effective length of query: 332
Effective length of database: 340
Effective search space:   112880
Effective search space used:   112880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_057508721.1 ABB28_RS11280 (3-dehydroquinate synthase)
to HMM TIGR01357 (aroB: 3-dehydroquinate synthase (EC 4.2.3.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.2837.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2837.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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