Alignments for a candidate for aroC in Stenotrophomonas chelatiphaga DSM 21508

Align Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EPSP phospholyase; EC 4.2.3.5 (characterized)
to candidate WP_057687230.1 ABB28_RS15240 chorismate synthase

Query= SwissProt::P12008
         (361 letters)



>NCBI__GCF_001431535.1:WP_057687230.1
          Length = 367

 Score =  456 bits (1172), Expect = e-133
 Identities = 221/360 (61%), Positives = 278/360 (77%)

Query: 1   MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRR 60
           M+ N+ G+LF VTTFGESHG A+GC++DG PPG+ L  A+  HDL RR  G SR+T+ RR
Sbjct: 1   MSSNSFGKLFTVTTFGESHGPAIGCVIDGCPPGLALDAAEFAHDLQRRATGKSRHTSARR 60

Query: 61  EPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGLRDY 120
           E D+V+ILSGV+EG+TTGT I LLI NTDQRS+DY+ I   FRPGHADY+Y  KYG+RD 
Sbjct: 61  EADEVEILSGVYEGLTTGTPIALLIRNTDQRSKDYANIGQQFRPGHADYSYWHKYGIRDP 120

Query: 121 RGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQMGDIPLDIKDWSQVEQNPFFC 180
           RGGGRSSARET MRVAAG +AKK+LAE+FG+ +RG L+Q+G+I     DWS VE NPFF 
Sbjct: 121 RGGGRSSARETTMRVAAGVVAKKWLAERFGVTVRGYLSQLGEITPRAFDWSAVEDNPFFW 180

Query: 181 PDPDKIDALDELMRALKKEGDSIGAKVTVVASGVPAGLGEPVFDRLDADIAHALMSINAV 240
           PD  ++  L+  M AL++ GDS+GA+V VVA  VP G GEP++ +LD ++A ALMSINAV
Sbjct: 181 PDAAQVPELETYMDALRRSGDSVGARVDVVADNVPPGWGEPIYGKLDGELASALMSINAV 240

Query: 241 KGVEIGDGFDVVALRGSQNRDEITKDGFQSNHAGGILGGISSGQQIIAHMALKPTSSITV 300
           KGVEIGDGF   A +G+++RD +T  GF SNHAGGILGGIS+GQ + A + LKPTSS+ +
Sbjct: 241 KGVEIGDGFASAAQKGTEHRDLLTPQGFASNHAGGILGGISTGQPVTASIVLKPTSSLRL 300

Query: 301 PGRTINRFGEEVEMITKGRHDPCVGIRAVPIAEAMLAIVLMDHLLRQRAQNADVKTDIPR 360
           PG +++  G  +E++T GRHDPCVGIRA PIAEAM+A+VLMD  LR RAQ  DV +  PR
Sbjct: 301 PGASLDSEGNVIEVVTTGRHDPCVGIRAAPIAEAMMALVLMDQALRHRAQCGDVGSITPR 360


Lambda     K      H
   0.319    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 429
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 367
Length adjustment: 29
Effective length of query: 332
Effective length of database: 338
Effective search space:   112216
Effective search space used:   112216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_057687230.1 ABB28_RS15240 (chorismate synthase)
to HMM TIGR00033 (aroC: chorismate synthase (EC 4.2.3.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.28473.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28473.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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