Align 3-dehydroquinate dehydratase (EC 4.2.1.10) (characterized)
to candidate WP_057507424.1 ABB28_RS04150 type II 3-dehydroquinate dehydratase
Query= BRENDA::Q9PH97
(148 letters)
>NCBI__GCF_001431535.1:WP_057507424.1
Length = 147
Score = 216 bits (549), Expect = 2e-61
Identities = 103/146 (70%), Positives = 120/146 (82%)
Query: 1 MAHLLLLHGPNLNLLGTREPEIYGRITLPQIDAALAERATAAGHGLSSLQSNAEHVLIER 60
MA LL+LHGPNLNLLGTREP +YG TLPQID AL + AAGH + SLQSNAEHVL++R
Sbjct: 1 MAKLLVLHGPNLNLLGTREPGVYGHTTLPQIDQALHAQGAAAGHAVESLQSNAEHVLVDR 60
Query: 61 IHATPEDGTAFILINPGAFTHTSVALRDALLAVALPFVEIHLSNPYTREPFRHHSYLADK 120
I A DGTAFILINP AFTHTSVALRDAL AV +PF+EIHLSNP++REPFR HSY +DK
Sbjct: 61 IQAARLDGTAFILINPAAFTHTSVALRDALAAVDVPFIEIHLSNPHSREPFRQHSYFSDK 120
Query: 121 ALGVVCGFGVDSYRIALEGVIARLGS 146
A+GV+CGFG DSYR A++ + RL +
Sbjct: 121 AVGVICGFGADSYRYAMDAALQRLSN 146
Lambda K H
0.322 0.139 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 109
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 147
Length adjustment: 16
Effective length of query: 132
Effective length of database: 131
Effective search space: 17292
Effective search space used: 17292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 42 (20.8 bits)
Align candidate WP_057507424.1 ABB28_RS04150 (type II 3-dehydroquinate dehydratase)
to HMM TIGR01088 (aroQ: 3-dehydroquinate dehydratase, type II (EC 4.2.1.10))
../bin/blast/fastacmd -i /tmp/list.14576.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14576.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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