Alignments for a candidate for aroD in Stenotrophomonas chelatiphaga DSM 21508

Align Catabolic 3-dehydroquinate dehydratase; 3-dehydroquinase; EC 4.2.1.10 (characterized)
to candidate WP_245625322.1 ABB28_RS09905 type I 3-dehydroquinate dehydratase

Query= SwissProt::Q59087
         (272 letters)



>NCBI__GCF_001431535.1:WP_245625322.1
          Length = 293

 Score =  240 bits (612), Expect = 3e-68
 Identities = 124/262 (47%), Positives = 172/262 (65%)

Query: 7   STTYAAENTVPASKSTYVVKNLNIGDLPVKTLVPITAKTREQALAQAKVIAENKDADIAE 66
           +T+  A    P +     +  + IG+   KT+VPITA T EQAL QAKVIA +   DIAE
Sbjct: 24  ATSIPAVQAAPPAIRPLQIGTMRIGEGMPKTIVPITAATAEQALQQAKVIAASASTDIAE 83

Query: 67  FRIDLLEFASDTKKVIALGQELNQILKDKPLLATIRTSNEGGKLKVTDQEYEKIYSEYLK 126
           +RID L+ A+D   ++ALG+ + Q L  KPL+ T RT  EGG   ++D +Y  +Y+  L+
Sbjct: 84  WRIDYLDIATDGTALLALGKRIEQALAGKPLIVTFRTQAEGGSKAISDADYGALYATLLR 143

Query: 127 KPFMQLLDIEMFRDQAAVAKLTKLAHQKKVLVVMSNHDFDKTPSEQEIVSRLLKQDQMGA 186
             F+Q+LD+EMFRD+  V  L   AH     VVMS+HDF  TP  +EIV+RLL+Q  MGA
Sbjct: 144 GGFVQMLDVEMFRDRQVVQSLVDAAHGAGAKVVMSSHDFHATPPREEIVARLLRQQAMGA 203

Query: 187 DILKIAVMPKSKQDVFTLMNATLKVSEQSTKPLLTMSMGRLGTISRIATANMGGSLSFGM 246
           D+LKIAVMP+   DV  L++AT +V +QS +PLLTM+MG  G +SR+A    G +++FGM
Sbjct: 204 DVLKIAVMPRDAGDVLALLDATWQVRQQSDRPLLTMAMGGTGVVSRLAGETFGQAMTFGM 263

Query: 247 IGEASAPGQIDVTALKQFLKTV 268
           IG  SAPGQ++V  L+  L+ +
Sbjct: 264 IGTPSAPGQVEVEQLQSVLQVI 285


Lambda     K      H
   0.314    0.129    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 209
Number of extensions: 5
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 293
Length adjustment: 26
Effective length of query: 246
Effective length of database: 267
Effective search space:    65682
Effective search space used:    65682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)

Align candidate WP_245625322.1 ABB28_RS09905 (type I 3-dehydroquinate dehydratase)
to HMM TIGR01093 (aroD: 3-dehydroquinate dehydratase, type I (EC 4.2.1.10))

Software error:

../bin/blast/fastacmd -i /tmp/list.12600.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.12600.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.