Alignments for a candidate for aroE in Stenotrophomonas chelatiphaga DSM 21508

Align shikimate dehydrogenase (NADP+) (EC 1.1.1.25) (characterized)
to candidate WP_057508550.1 ABB28_RS10360 shikimate dehydrogenase

Query= BRENDA::Q88RQ5
         (274 letters)



>NCBI__GCF_001431535.1:WP_057508550.1
          Length = 280

 Score =  191 bits (485), Expect = 2e-53
 Identities = 122/274 (44%), Positives = 156/274 (56%), Gaps = 12/274 (4%)

Query: 2   DQYVVFGNPIGHSKSPLIHRLFAEQTGQDLEYATLLAPLDEFSDCARGFFKQGS-GGNVT 60
           D+Y VFG+PI HS SP IH  F  Q G  ++Y  + A  D F      F  +G  G NVT
Sbjct: 3   DRYAVFGHPIAHSLSPDIHAAFGRQEGIAVDYRAIDATPDGFLAALEAFAAEGGRGANVT 62

Query: 61  VPFKEEAFRLCDSLTPRARRAGAVNTLSKLADGTLQGDNTDGAGLVRDLTVNAGVELAGK 120
           +P KE AF LC + T RA RAG+VNTL +  D    GD TDGAGLVRDLT   G +L G+
Sbjct: 63  LPHKEAAFALCTTRTARATRAGSVNTLLRKGD-RWHGDTTDGAGLVRDLTDRHGQDLRGR 121

Query: 121 RILILGAGGAVRGVLEPILAHKPQSLVIANRTVEKAEQLAREFDELGPVVASGFAWLQE- 179
           R+L+LGAGG+ R V   +L    + LV+ NRT E+A++L     E G  ++  +  L + 
Sbjct: 122 RVLLLGAGGSARSVAPSLLDAGIRELVVVNRTPERADELIDAMGEPGRALSRYWDDLHDL 181

Query: 180 -PVDVIINATSA----SLAGELPPIADSLVEAGRTVCYDMMYGKEPTPFCQWATKLGAAK 234
              ++I+NATSA    S + +LP    SLV +  T   D+ YG     F  WA       
Sbjct: 182 GDFELIVNATSAGRDPSASFKLPL---SLVNS-MTTAVDLNYGDAAIAFLAWARAAECRN 237

Query: 235 VLDGLGMLAEQAAEAFFIWRGVRPDTAPVLAELR 268
            +DGLGML EQAAE+F  W  VRPDT  V A LR
Sbjct: 238 TVDGLGMLVEQAAESFQQWHEVRPDTDAVYAGLR 271


Lambda     K      H
   0.319    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 221
Number of extensions: 7
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 280
Length adjustment: 25
Effective length of query: 249
Effective length of database: 255
Effective search space:    63495
Effective search space used:    63495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate WP_057508550.1 ABB28_RS10360 (shikimate dehydrogenase)
to HMM TIGR00507 (aroE: shikimate dehydrogenase (EC 1.1.1.25))

Software error:

../bin/blast/fastacmd -i /tmp/list.23428.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23428.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.