Alignments for a candidate for cysK in Stenotrophomonas chelatiphaga DSM 21508

Align O-ureido-L-serine synthase; Cysteine synthase homolog DscD; O-acetylserine sulfhydrylase; EC 2.6.99.3; EC 2.5.1.47 (characterized)
to candidate WP_057687361.1 ABB28_RS15950 cysteine synthase A

Query= SwissProt::D2Z027
         (324 letters)



>NCBI__GCF_001431535.1:WP_057687361.1
          Length = 319

 Score =  429 bits (1102), Expect = e-125
 Identities = 210/318 (66%), Positives = 262/318 (82%)

Query: 1   MPLFNSILDTIGRTPIVRLQRMAPEHTSVYVKVESFNPGGSVKDRLALSVVLDAEAKGLL 60
           M L+ SILDTIG TPIV+L R+AP H ++Y KVESFNPGGSVKDRLAL++VLDAE +GLL
Sbjct: 1   MALYESILDTIGNTPIVKLHRLAPAHVTLYAKVESFNPGGSVKDRLALAIVLDAEQRGLL 60

Query: 61  KPGDTIVECTSGNVGIALAMVAAARGYRFVAVMGDTYSVERRKLIRAYGGKLVLFPGHLG 120
           KPGDTI+E TSGN G+ALAMVAAARGY+FVA M +T+S+ERRKL+RAYG K++L P    
Sbjct: 61  KPGDTIIEATSGNTGVALAMVAAARGYKFVATMVETFSIERRKLMRAYGAKVILTPAAER 120

Query: 121 SKGGNLIADELAEKYGWFRARQFDNPANPSYHRETTASEILADFAGKRLDHFVTGFGTTG 180
             G    A ELA+++GWF A QF NPANP+YHR TTA+EIL DFAG+RLD+FV+G+GT G
Sbjct: 121 GSGMVRRAAELAQEHGWFLASQFANPANPAYHRSTTAAEILRDFAGRRLDYFVSGWGTGG 180

Query: 181 TLTGVGQMLRVARPEVRVVALEPSNAAMLARGEWSPHQIQGLAPNFVPGVLDRSVIDDLV 240
           TLTGVG++L+VARP+ R+VA EP+ AA+L   +W PH+IQG  P+FVP VL+R+V+D+L+
Sbjct: 181 TLTGVGEVLKVARPQTRIVATEPAGAALLKGDDWKPHKIQGWTPDFVPDVLNRNVVDELL 240

Query: 241 TMDEVTARDTSRRLAAEEGIFAGISAGATVATALSIAEHAPEGTVLLAMLPDTGERYLST 300
           T+++  A  T+RRLAAEEG+F GISAGAT+A+AL +AE A  G+V+LAMLPDTGERY ST
Sbjct: 241 TVEDDRAISTARRLAAEEGLFVGISAGATLASALDVAERAEPGSVILAMLPDTGERYFST 300

Query: 301 FLFDGVDEGSDDAWLASL 318
            LF  V+EGSDD WLA L
Sbjct: 301 PLFADVNEGSDDDWLAGL 318


Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 368
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 319
Length adjustment: 28
Effective length of query: 296
Effective length of database: 291
Effective search space:    86136
Effective search space used:    86136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_057687361.1 ABB28_RS15950 (cysteine synthase A)
to HMM TIGR01139 (cysK: cysteine synthase A (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.31201.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31201.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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