Alignments for a candidate for glnA in Stenotrophomonas chelatiphaga DSM 21508

Align glutamine synthetase (EC 6.3.1.2) (characterized)
to candidate WP_057509241.1 ABB28_RS14190 type I glutamate--ammonia ligase

Query= BRENDA::P0A1P6
         (469 letters)



>NCBI__GCF_001431535.1:WP_057509241.1
          Length = 469

 Score =  639 bits (1647), Expect = 0.0
 Identities = 302/468 (64%), Positives = 367/468 (78%)

Query: 1   MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKG 60
           MS E+V  ++ +++++FVDLRF D +G EQHVT P   + A  FEEGKMFDGSSI GWKG
Sbjct: 1   MSVENVEKLVKDNQIEFVDLRFVDMRGIEQHVTFPVSIIEASLFEEGKMFDGSSIAGWKG 60

Query: 61  INESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLRATG 120
           INESDMVL+PD S+A +DPF+AD T++I CDIL+P T+Q Y R PR IAKRAE +L+++G
Sbjct: 61  INESDMVLLPDPSSAYVDPFYADPTIVISCDILDPATMQPYGRCPRGIAKRAEAFLKSSG 120

Query: 121 IADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGY 180
           IA+   FGPEPEFF+FD +RF   +  +   +D  E AWN+  KY+G N G+RPGVKGGY
Sbjct: 121 IAEQAFFGPEPEFFIFDSVRFANDMGNTFFKVDSEEAAWNTGAKYDGANSGYRPGVKGGY 180

Query: 181 FPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYK 240
           FPVPP DS  D+R+EMC  +EQ+G+ VE  HHEVATAGQ E+ T+F+T+ +KADE+   K
Sbjct: 181 FPVPPTDSLHDLRAEMCKTLEQVGIEVEVQHHEVATAGQCEIGTKFSTLVQKADELLRMK 240

Query: 241 YVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIG 300
           YV+ NVAHR GKTATFMPKP+ GDNGSGMH H SL+K GTNLFSGD Y GLS+ AL+YIG
Sbjct: 241 YVIKNVAHRNGKTATFMPKPIVGDNGSGMHVHQSLSKGGTNLFSGDGYGGLSQLALWYIG 300

Query: 301 GVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVASPKARRIEVR 360
           G+ KHAKAINA AN  TNSYKRLVPG+EAPVMLAYSARNRSAS RIP V +PKARRIE+R
Sbjct: 301 GIFKHAKAINAFANAGTNSYKRLVPGFEAPVMLAYSARNRSASCRIPFVTNPKARRIEMR 360

Query: 361 FPDPAANPYLCFAALLMAGLDGIKNKIHPGEAMDKNLYDLPPEEAKEIPQVAGSLEEALN 420
           FPDP  + YL F  L+MAGLDGIKN+I PG   DK+LYDLPPEE K IPQV  SL++AL 
Sbjct: 361 FPDPIQSGYLTFTVLMMAGLDGIKNQIDPGAPSDKDLYDLPPEEEKLIPQVCSSLDQALE 420

Query: 421 ALDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYS 468
           ALD DREFLKAGGV  D+ ID YIAL+ +E  + R   HP+E++LYY+
Sbjct: 421 ALDKDREFLKAGGVMDDDFIDGYIALKMQEVTKFRAATHPLEYQLYYA 468


Lambda     K      H
   0.318    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 743
Number of extensions: 27
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 469
Length adjustment: 33
Effective length of query: 436
Effective length of database: 436
Effective search space:   190096
Effective search space used:   190096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_057509241.1 ABB28_RS14190 (type I glutamate--ammonia ligase)
to HMM TIGR00653 (glnA: glutamine synthetase, type I (EC 6.3.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.19271.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19271.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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