Alignments for a candidate for hisA in Stenotrophomonas chelatiphaga DSM 21508

Align 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) (characterized)
to candidate WP_057506752.1 ABB28_RS00550 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase

Query= ecocyc::PRIBFAICARPISOM-MONOMER
         (245 letters)



>NCBI__GCF_001431535.1:WP_057506752.1
          Length = 244

 Score =  242 bits (617), Expect = 6e-69
 Identities = 118/241 (48%), Positives = 160/241 (66%)

Query: 1   MIIPALDLIDGTVVRLHQGDYGKQRDYGNDPLPRLQDYAAQGAEVLHLVDLTGAKDPAKR 60
           ++ PALD+ +G VVRL QGDY ++  YG+DPLPR Q +A QGA+ +HLVDL  A+     
Sbjct: 4   IVYPALDIREGRVVRLRQGDYAQETRYGDDPLPRAQAFARQGAQWMHLVDLDAARAGGYT 63

Query: 61  QIPLIKTLVAGVNVPVQVGGGVRSEEDVAALLEAGVARVVVGSTAVKSQDMVKGWFERFG 120
             PL+  +     + VQ GGGVR  EDV  +L+AG +RVVVGS AV+  D V GW   FG
Sbjct: 64  LAPLLAQIRQQAGLHVQTGGGVRGREDVQRILQAGASRVVVGSLAVREPDAVIGWLAEFG 123

Query: 121 ADALVLALDVRIDEQGNKQVAVSGWQENSGVSLEQLVETYLPVGLKHVLCTDISRDGTLA 180
            + + +ALD R D+ G  Q+ + GW EN+GV+L+ L + Y   G++H+LCTDI+RDG LA
Sbjct: 124 PERITIALDARQDQDGQWQLPIHGWTENAGVTLDVLAQRYAAAGMRHLLCTDIARDGMLA 183

Query: 181 GSNVSLYEEVCARYPQVAFQSSGGIGDIDDVAALRGTGVRGVIVGRALLEGKFTVKEAIA 240
           G N+ LY  + A  P VA Q+SGGI D+ DVAA R  G  G ++G+ALLE +  + EA+A
Sbjct: 184 GPNLDLYRHLAALLPGVAIQASGGIRDVADVAASRAAGCSGAVLGKALLEQRMDLAEALA 243

Query: 241 C 241
           C
Sbjct: 244 C 244


Lambda     K      H
   0.318    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 192
Number of extensions: 9
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 244
Length adjustment: 24
Effective length of query: 221
Effective length of database: 220
Effective search space:    48620
Effective search space used:    48620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)

Align candidate WP_057506752.1 ABB28_RS00550 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase)
to HMM TIGR00007 (hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.25920.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25920.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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