Alignments for a candidate for hisD in Stenotrophomonas chelatiphaga DSM 21508

Align Histidinol dehydrogenase; HDH; EC 1.1.1.23 (characterized)
to candidate WP_057506748.1 ABB28_RS00530 histidinol dehydrogenase

Query= SwissProt::P06988
         (434 letters)



>NCBI__GCF_001431535.1:WP_057506748.1
          Length = 431

 Score =  404 bits (1038), Expect = e-117
 Identities = 222/429 (51%), Positives = 286/429 (66%), Gaps = 7/429 (1%)

Query: 7   IDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTVTAL 66
           ++W+      + + L RP  + +      V  ++  V+A GD ALRE +A+FD+  +  +
Sbjct: 4   LNWSELNELDRAEALQRPVQAVAAQTRHAVAALIAQVRADGDAALREITARFDRVQLDDI 63

Query: 67  KVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRPVAS 126
           +V+A E  AA + ++ +L+ AM  A   I  FH A       VET PGV C+++ RP+  
Sbjct: 64  EVTAAEFEAAEQAVAVDLRAAMEEAAARIRRFHEAGMSQGYAVETAPGVHCERMIRPIGR 123

Query: 127 VGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPPPI---ADE-ILYAAQLCGVQDVF 182
           VGLY+P GSAPL ST LML  PA++AGC +VVLC+PP     AD  +L AA+L GVQ VF
Sbjct: 124 VGLYVPAGSAPLPSTALMLGVPAALAGCPQVVLCTPPRADGSADPAVLVAARLTGVQRVF 183

Query: 183 NVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGA-AIDMPAGPSEVLV 241
            +GGAQAIAA+A GT SVP  DK+FGPGN+FVTEAK+QV+Q  DG+ AIDMPAGPSEVLV
Sbjct: 184 KLGGAQAIAAMAHGTASVPACDKLFGPGNSFVTEAKQQVAQ--DGSVAIDMPAGPSEVLV 241

Query: 242 IADSGATPDFVASDLLSQAEHGPDSQVILLTPAADMARRVAEAVERQLAELPRAETARQA 301
           IAD+GA   FVA+DLLSQAEHGPDSQV+LLT  A +   V   VERQ+A LPR   AR+A
Sbjct: 242 IADAGANAAFVAADLLSQAEHGPDSQVLLLTDDAALLEAVEAEVERQVALLPRETIARRA 301

Query: 302 LNASRLIVTKDLAQCVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDY 361
           L ASRLI+   L    EISN+Y PEHLI+  R  R  +  + +AGSVFLGD++PE+ GDY
Sbjct: 302 LGASRLILVDRLQDAFEISNRYAPEHLILALREPRAWLGQVQAAGSVFLGDYTPEALGDY 361

Query: 362 ASGTNHVLPTYGYTATCSSLGLADFQKRMTVQELSKEGFSALASTIETLAAAERLTAHKN 421
            SGTNHVLPT G     S + +A FQ  ++VQ  S EG  A+      LA+AE L AH+ 
Sbjct: 362 CSGTNHVLPTAGAARAWSGVSVASFQNTISVQSASAEGIVAIGGCARILASAEGLDAHER 421

Query: 422 AVTLRVNAL 430
           AV LR+ A+
Sbjct: 422 AVALRMEAV 430


Lambda     K      H
   0.315    0.128    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 472
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 431
Length adjustment: 32
Effective length of query: 402
Effective length of database: 399
Effective search space:   160398
Effective search space used:   160398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate WP_057506748.1 ABB28_RS00530 (histidinol dehydrogenase)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.7588.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7588.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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