Alignments for a candidate for hisG in Stenotrophomonas chelatiphaga DSM 21508

Align ATP phosphoribosyltransferase (characterized)
to candidate WP_057506747.1 ABB28_RS00525 ATP phosphoribosyltransferase

Query= CharProtDB::CH_024688
         (299 letters)



>NCBI__GCF_001431535.1:WP_057506747.1
          Length = 303

 Score =  229 bits (583), Expect = 8e-65
 Identities = 125/293 (42%), Positives = 178/293 (60%), Gaps = 2/293 (0%)

Query: 6   RLRIAMQKSGRLSDDSRELLARCGIKINLHTQRLIAMAENMPIDILRVRDDDIPGLVMDG 65
           RLRIA+QK+GRL++ +R LL+ CG+       +L    E++P+D+L VRDDDIPGL+ DG
Sbjct: 12  RLRIAIQKNGRLAEPARNLLSACGLSWRESRDKLFCYGESLPVDLLLVRDDDIPGLIADG 71

Query: 66  VVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFGGCRLSLATPVDEAWDGPLSLNGK 125
           V DLGI+G N L+E+   R  +G  P +  LR L FG CRL LA P +  W GP  L G 
Sbjct: 72  VCDLGIVGRNELDEQGAARVQRGLKPAFQALRGLGFGACRLMLAVPEEWDWQGPQQLAGT 131

Query: 126 RIATSYPHLLKRYLDQKGISFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREV 185
           RIATSYP +LK +LD + I  +   L+GSVE+APR G AD ICDLVS+G TL AN L+ V
Sbjct: 132 RIATSYPAILKDWLDARDIQAQVVELSGSVEIAPRLGTADLICDLVSSGGTLRANQLKPV 191

Query: 186 EVIYRSKACLIQRDGEMEESKQQLIDKLLTRIQGVIQARESKYIMMHAPTERLDEVIALL 245
           E +  S+A L       ++++  L+  LL R+ GV+Q ++ K +M  A    +  +  LL
Sbjct: 192 ETLLDSEAVLAGAVIAPDDARGALLAMLLRRLDGVVQVQDRKLLMFRAEPANVAALEKLL 251

Query: 246 PGAERPTILPLAGDQQRVAMHMVSSETLFWETMEKLKALGASSILVLPIEKMM 298
             AE   ++ L  D     +  +    L W+ ME+L+  GA  ++VL +E+ +
Sbjct: 252 ADAE--PLVRLPADDGAPRLQTMCPGPLSWQRMEELERAGAQGLMVLSVERSL 302


Lambda     K      H
   0.320    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 256
Number of extensions: 12
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 303
Length adjustment: 27
Effective length of query: 272
Effective length of database: 276
Effective search space:    75072
Effective search space used:    75072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_057506747.1 ABB28_RS00525 (ATP phosphoribosyltransferase)
to HMM TIGR00070 (hisG: ATP phosphoribosyltransferase (EC 2.4.2.17))

Software error:

../bin/blast/fastacmd -i /tmp/list.23892.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23892.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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