Alignments for a candidate for hisH in Stenotrophomonas chelatiphaga DSM 21508

Align IGP synthase glutamine amidotransferase subunit; EC 2.4.2.- (characterized)
to candidate WP_057506751.1 ABB28_RS00545 imidazole glycerol phosphate synthase subunit HisH

Query= CharProtDB::CH_024511
         (196 letters)



>NCBI__GCF_001431535.1:WP_057506751.1
          Length = 201

 Score =  176 bits (446), Expect = 3e-49
 Identities = 91/194 (46%), Positives = 127/194 (65%), Gaps = 1/194 (0%)

Query: 3   VVILDTGCANLNSVKSAIARHGYEPKVSRDPDVVLLADKLFLPGVGTAQAAMDQVREREL 62
           V ++D G ANL SV+ A+ R G + ++ RD D +  A ++ LPGVG A  AM ++  + L
Sbjct: 4   VALIDAGGANLGSVRYALERLGAQVRLVRDADGLRDARRVILPGVGAAVPAMQRLHAQGL 63

Query: 63  FDLIKACTQPVLGICLGMQLLGRRSEESNGVDLLGIIDEDVPKMTDF-GLPLPHMGWNRV 121
           F+ ++    P+LGICLGMQLL  RSEE  GV  LG+I   V K+    G+ +PHMGWNR+
Sbjct: 64  FEPLRQLEVPLLGICLGMQLLFERSEEGGGVATLGLIPGTVRKLVPATGIRVPHMGWNRL 123

Query: 122 YPQAGNRLFQGIEDGAYFYFVHSYAMPVNPWTIAQCNYGEPFTAAVQKDNFYGVQFHPER 181
            P  G+ L + I + A  YFVHSYA P+N  T+A C++G  F+A V+   ++G Q+HPER
Sbjct: 124 LPLRGSPLLRDIPERASAYFVHSYAAPLNAHTVAACDHGGLFSAVVEHGRYFGAQYHPER 183

Query: 182 SGAAGAKLLKNFLE 195
           SG  GA LL+NFL+
Sbjct: 184 SGDTGALLLRNFLQ 197


Lambda     K      H
   0.322    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 130
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 201
Length adjustment: 20
Effective length of query: 176
Effective length of database: 181
Effective search space:    31856
Effective search space used:    31856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate WP_057506751.1 ABB28_RS00545 (imidazole glycerol phosphate synthase subunit HisH)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.13231.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13231.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.