Align Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 (characterized)
to candidate WP_057508546.1 ABB28_RS10335 dihydroxy-acid dehydratase
Query= SwissProt::P55186
(617 letters)
>NCBI__GCF_001431535.1:WP_057508546.1
Length = 611
Score = 903 bits (2333), Expect = 0.0
Identities = 459/616 (74%), Positives = 507/616 (82%), Gaps = 6/616 (0%)
Query: 1 MPPYRSRTTTHGRNMAGARGLWRATGMKDEDFGKPIIAVANSFTQFVPGHVHLKDLGQLV 60
MP YRSRT+T GRNMAGAR LWRATGMKD DF KPIIA+ANSFTQFVPGHVHLKDLGQLV
Sbjct: 1 MPEYRSRTSTAGRNMAGARALWRATGMKDGDFHKPIIAIANSFTQFVPGHVHLKDLGQLV 60
Query: 61 AREIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRDLIADSVEYMVNAHCADAIVCIS 120
AREIE AGGVAKEFNTIAVDDGIAMGH GMLYSLPSR++IADSVEYMVNAHCADAIVCIS
Sbjct: 61 AREIEQAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSREIIADSVEYMVNAHCADAIVCIS 120
Query: 121 NCDKITPGMLMAAMRLNIPVVFVSGGPMEAGKVTVKGKIRALDLVDAMVVAADDSYSDEE 180
NCDKITPGMLMAA+RL+IPV+FVSGGPMEAGK + LDLVDAMV+AADDS SDE+
Sbjct: 121 NCDKITPGMLMAALRLDIPVIFVSGGPMEAGKTKLSE--HKLDLVDAMVIAADDSASDEK 178
Query: 181 VEAIEKAACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSVLATHADREALFKEAGRVVV 240
V E++ACPTCGSCSGMFTANSMNCLTEALGLSLPGNG+ LATHADRE LF+ AGRV+V
Sbjct: 179 VAEYERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGTTLATHADREMLFRRAGRVIV 238
Query: 241 DLCQRWYEQEDATALPRGIATRAAFENAMSLDIAMGGSTNTVLHLLAAAHEGGIDFSMAD 300
+LC RWY ED ALP GIAT AAF NAM+LDIAMGGSTNT+LHLLAAA EGG+DF +
Sbjct: 239 ELCHRWYGGEDPRALPSGIATAAAFGNAMTLDIAMGGSTNTILHLLAAAQEGGVDFDLTH 298
Query: 301 IDRLSRHVPCLSKVAPAKSDVHMEDVHRAGGVMAILGELERGGLIDASQPTVHAPTMGEA 360
ID LSR VP L KVAP H+EDVHRAGGV ILGEL+R GL+D S PTVH+P++ +A
Sbjct: 299 IDALSRRVPQLCKVAPNTPQYHIEDVHRAGGVFGILGELDRAGLLDTSVPTVHSPSLADA 358
Query: 361 LARWDIGRTNSQIAHEFFKAAPGGKPTQVAFSQAARWEELDLDRENGVIRSVEHPFSKDG 420
L RWD T+ HEFF A P G PTQVAFSQA RW LDLDR G IRS++H +S +G
Sbjct: 359 LKRWDATLTDDAKVHEFFAAGPAGIPTQVAFSQATRWPSLDLDRAEGCIRSLQHAYSLEG 418
Query: 421 GLAVLFGNLAPEGCIVKTAGVDESILTFRGTARVFESQDAAVSGILGGQVKAGEVVVIRY 480
GLAVL GNLA +GC+VKTAGVDESI F G ARVFESQDAAV+GIL QVK G+VVVIRY
Sbjct: 419 GLAVLRGNLAVDGCVVKTAGVDESIHVFEGNARVFESQDAAVAGILADQVKPGDVVVIRY 478
Query: 481 EGPKGGPGMQEMLYPTTYLKSKGLGAACALVTDGRFSGGTSGLSIGHVSPEAGEGGLIAL 540
EGPKGGPGMQEMLYPT+YLKSKGLG CAL+TDGRFSGGTSGLSIGHVSPEA GG+I L
Sbjct: 479 EGPKGGPGMQEMLYPTSYLKSKGLGKQCALLTDGRFSGGTSGLSIGHVSPEAASGGVIGL 538
Query: 541 VETGDPILIDIPTRGITLEVSDAVLAARREAQLARGKDAWTPLN-RKRDLTPALRAYAAM 599
V GD I IDIP RGITL V DA LA RR A ARG W PL R R +T AL+AYA +
Sbjct: 539 VHDGDRIRIDIPARGITLLVDDATLAERRAAADARG---WKPLEARPRKVTSALKAYALL 595
Query: 600 TTNAARGAVRDVSQIE 615
T+A +GAVR+ + ++
Sbjct: 596 ATSADKGAVRNTALLD 611
Lambda K H
0.318 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1255
Number of extensions: 42
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 611
Length adjustment: 37
Effective length of query: 580
Effective length of database: 574
Effective search space: 332920
Effective search space used: 332920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Align candidate WP_057508546.1 ABB28_RS10335 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.28005.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28005.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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