Alignments for a candidate for leuC in Stenotrophomonas chelatiphaga DSM 21508

Align 3-isopropylmalate dehydratase large subunit; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 (characterized)
to candidate WP_057509303.1 ABB28_RS14500 3-isopropylmalate dehydratase large subunit

Query= SwissProt::Q7TXH6
         (473 letters)



>NCBI__GCF_001431535.1:WP_057509303.1
          Length = 472

 Score =  514 bits (1325), Expect = e-150
 Identities = 264/472 (55%), Positives = 321/472 (68%), Gaps = 11/472 (2%)

Query: 5   TGEPRTLAEKIWDDHIVVSGGGCAPDLIYIDLHLVHEVTSPQAFDGLRLAGRRVRRPELT 64
           T  P TL +K+WD H+VV     AP ++YIDLHL+HEVTSPQAF  LR  G   RRP+ T
Sbjct: 2   TPAPSTLYDKLWDAHVVVPESDSAPAVLYIDLHLIHEVTSPQAFTELRERGLSPRRPDRT 61

Query: 65  LATEDHNVPTV----DIDQPIADPVSRTQVETLRRNCAEFGIRLHSMGDIEQGIVHVVGP 120
             T DH+ PT+    D   P A   S  QV  L  NCAE+G+ L  M   ++GIVHV+ P
Sbjct: 62  KGTMDHSTPTLPARADGSLPYASAASEAQVAMLASNCAEYGVELFDMASADRGIVHVIAP 121

Query: 121 QLGLTQPGMTIVCGDSHTSTHGAFGALAMGIGTSEVEHVLATQTLPLRPFKTMAVNVDGR 180
           + G T PGMTIVCGDSHTSTHGAFG+LA GIGTSEV HVLATQ L  R  KTMA+ VDG 
Sbjct: 122 EQGFTLPGMTIVCGDSHTSTHGAFGSLAFGIGTSEVGHVLATQCLLQRKAKTMAITVDGV 181

Query: 181 LPDGVSAKDIILALIAKIGTGGGQGHVIEYRGSAIESLSMEGRMTICNMSIEAGARAGMV 240
           LP GV AKD++L +I  IG  GG GHV+E+RGS I ++ ME RMT+CNMSIEAGARAGMV
Sbjct: 182 LPAGVGAKDVVLHIIGVIGVNGGTGHVLEFRGSTIAAMDMEQRMTLCNMSIEAGARAGMV 241

Query: 241 APDETTYAFLRGRPHAPTGAQWDTALVYWQRLRTDVGAVFDTEVYLDAASLSPFVTWGTN 300
           APD+ T+ ++   P  P GA +D A+  W +LR+D GA FD EV +DAA + P +TWGT+
Sbjct: 242 APDQVTFDWVAATPRGPKGADFDAAVGRWTQLRSDDGARFDAEVTIDAADIRPTLTWGTH 301

Query: 301 PGQGVPLAAAVPDPQLMTDDAERQAAEKALAYMDLRPGTAMREIAVDAVFVGSCTNGRIE 360
           PG  + + A +P        A   AA+K L YM L  G  ++   VD VFVGSCTNGR+ 
Sbjct: 302 PGTAIAVDAPIP-------AANDAAAQKGLDYMQLHAGDTLQGTPVDVVFVGSCTNGRLS 354

Query: 361 DLRVVAEVLRGRKVADGVRMLIVPGSMRVRAQAEAEGLGEIFTDAGAQWRQAGCSMCLGM 420
           D+R VA+VL GR+VAD VRML+VPGS  V+ QAEAEG+  I   AGA+WR+ GCSMC+ M
Sbjct: 355 DMREVAQVLHGRQVADRVRMLVVPGSEIVKRQAEAEGIDAIVRAAGAEWREPGCSMCIAM 414

Query: 421 NPDQLASGERCAATSNRNFEGRQGAGGRTHLVSPAVAAATAVRGTLSSPADL 472
           N D +A G+   +TSNRNFEGRQG G RT L SP  AA  AV G +S   DL
Sbjct: 415 NGDLVAPGQLAVSTSNRNFEGRQGPGSRTLLASPMTAAWAAVNGRVSDTRDL 466


Lambda     K      H
   0.319    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 718
Number of extensions: 29
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 472
Length adjustment: 33
Effective length of query: 440
Effective length of database: 439
Effective search space:   193160
Effective search space used:   193160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate WP_057509303.1 ABB28_RS14500 (3-isopropylmalate dehydratase large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.25686.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25686.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.