Alignments for a candidate for ilvC in Stenotrophomonas chelatiphaga DSM 21508

Align ketol-acid reductoisomerase (NADP+) (EC 1.1.1.86) (characterized)
to candidate WP_057509297.1 ABB28_RS14470 ketol-acid reductoisomerase

Query= BRENDA::A0A0K2AZ61
         (332 letters)



>NCBI__GCF_001431535.1:WP_057509297.1
          Length = 324

 Score =  395 bits (1015), Expect = e-115
 Identities = 191/314 (60%), Positives = 237/314 (75%)

Query: 19  KVAVIGYGSQGHAHALSLRDSGVDVRVGLHEGSKSKAKAEEQGLRVVSPSEAAAEADVIM 78
           K+AV+GYGSQG AHAL+LR+SG DV VGL  G  ++ KA+  G  V +P+EA  +AD++ 
Sbjct: 10  KIAVVGYGSQGRAHALNLRESGFDVVVGLRPGGPTEVKAQADGFTVKAPAEAVKDADLVA 69

Query: 79  ILVPDPIQAQVYEEHIKDNLKDGDALFFGHGLNIRFGFIKPPAGVDVCMVAPKGPGHLVR 138
           +L PD +Q ++Y+E +  N+K G  L F HGLN+ F  I P   +DV +VAPKGPG LVR
Sbjct: 70  VLTPDMVQKKLYDEVLAPNMKQGAVLLFAHGLNVHFDMITPREDLDVVLVAPKGPGALVR 129

Query: 139 RQYEEGRGVPCIAAVEQDASGNAFALALSYAKGIGGTRAGVIKTTFTEETETDLFGEQAV 198
           R+YE GRGVPCI AV QD SGNA   AL+YA G+GG RA +I+TTF EETETDLFGEQAV
Sbjct: 130 REYEIGRGVPCIWAVHQDKSGNAAKHALAYATGLGGARANLIQTTFKEETETDLFGEQAV 189

Query: 199 LCGGTAALVKAGFETLTEAGYQPEIAYFECLHELKLIVDLMYEGGLEKMRWSISETAEWG 258
           LCGG +ALV+AGFETL EAGYQPEIAY+E LHELKLIVDL YEGG+ +M   ISETA++G
Sbjct: 190 LCGGASALVQAGFETLVEAGYQPEIAYYEVLHELKLIVDLFYEGGISRMLEFISETAQYG 249

Query: 259 DYVTGPRIITDATKAEMKKVLAEIQDGTFAKNWMDEYHGGLKKYNEYKQQDSEHLLETTG 318
           DYV+GPR+I   TK  MK+VL +IQDGTF KNW+ EY  GL  YN++KQ D +H +E  G
Sbjct: 250 DYVSGPRVIDAGTKERMKEVLKDIQDGTFTKNWVAEYEAGLPNYNKFKQADLDHPIEKVG 309

Query: 319 KQLRKLMSWVDEEA 332
           K+LR  M W+  +A
Sbjct: 310 KELRAKMVWLQGQA 323


Lambda     K      H
   0.316    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 376
Number of extensions: 7
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 324
Length adjustment: 28
Effective length of query: 304
Effective length of database: 296
Effective search space:    89984
Effective search space used:    89984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_057509297.1 ABB28_RS14470 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.2746.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2746.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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