Alignments for a candidate for leuB in Stenotrophomonas chelatiphaga DSM 21508

Align 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 (characterized)
to candidate WP_057509305.1 ABB28_RS14510 3-isopropylmalate dehydrogenase

Query= SwissProt::P12010
         (366 letters)



>NCBI__GCF_001431535.1:WP_057509305.1
          Length = 354

 Score =  374 bits (961), Expect = e-108
 Identities = 198/357 (55%), Positives = 250/357 (70%), Gaps = 7/357 (1%)

Query: 1   MKMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETL 60
           M  ++ VLPGDGIGPEV  AA+ VL+ V     H   F    IGG AID  G PLP  TL
Sbjct: 1   MHAEIVVLPGDGIGPEVAAAAVAVLEAVATRFNHTFNFNEHDIGGIAIDRHGEPLPASTL 60

Query: 61  DICRRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPL 120
           D CR +DAILLGAVGGPKW    A +RPE+GLL +R+ +GL+ANLRPV+ +   L ASP+
Sbjct: 61  DACRAADAILLGAVGGPKWSDPNAKVRPEQGLLAIRRALGLYANLRPVRTHEAALGASPI 120

Query: 121 KRERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTLAYTREEIERIIEKAFQLAQI 180
           K E +  VD V+VRELTGG+YFG  +       +   D  +Y+ EEIER++  AF+LA+ 
Sbjct: 121 KAELLRGVDFVVVRELTGGIYFGEKTRT----ADAASDLCSYSVEEIERVLRSAFELARQ 176

Query: 181 RRKKLASVDKANVLESSRMWREIAEETAKK-YPDVELSHMLVDSTSMQLIANPGQFDVIV 239
           RR K+ SVDKANVLE+SR+WR++A    +  +PDV L H LVDS +M L+A P ++DVIV
Sbjct: 177 RRGKVTSVDKANVLETSRLWRDVATRLGRDVFPDVALEHQLVDSMAMHLLAKPREYDVIV 236

Query: 240 TENMFGDILSDEASVITGSLGMLPSASL-RSDRFGMYEPVHGSAPDIAGQGKANPLGTVL 298
           TENMFGDIL+DEAS++ GSLG+LPSASL +    G+YEP+HGSAPDIAG+G ANP  T+ 
Sbjct: 237 TENMFGDILTDEASMLAGSLGLLPSASLGQPGAVGIYEPIHGSAPDIAGKGIANPYATIF 296

Query: 299 SAALMLRYSFGLEKEAAAIEKAVDDVLQDGYCTGDLQVANGKVVSTIELTDRLIEKL 355
           SAA++LR+S GLE EAAA+E AV   L  G  T DL  A G  VST E T  ++E+L
Sbjct: 297 SAAMLLRHSLGLEAEAAAVEAAVHAALDAGVFTADLAAA-GAAVSTAEATAAVLERL 352


Lambda     K      H
   0.316    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 397
Number of extensions: 18
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 354
Length adjustment: 29
Effective length of query: 337
Effective length of database: 325
Effective search space:   109525
Effective search space used:   109525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_057509305.1 ABB28_RS14510 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))

Software error:

../bin/blast/fastacmd -i /tmp/list.20087.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20087.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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