Alignments for a candidate for asd in Stenotrophomonas chelatiphaga DSM 21508

Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate WP_057687228.1 ABB28_RS15230 aspartate-semialdehyde dehydrogenase

Query= SwissProt::P23247
         (337 letters)



>NCBI__GCF_001431535.1:WP_057687228.1
          Length = 342

 Score =  380 bits (975), Expect = e-110
 Identities = 195/336 (58%), Positives = 244/336 (72%), Gaps = 4/336 (1%)

Query: 3   QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEF 62
           + F+VA+ GATGAVGETML +L ER+FPV  L LLAS RS G    FNG    ++++ +F
Sbjct: 6   RSFHVAVVGATGAVGETMLSILAERDFPVGTLTLLASSRSAGGEVEFNGHKHIIKDLADF 65

Query: 63  DWSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFR 122
           D + V IALFSAGG +S  +AP  A AG VVIDN+S FRYD D+PLVV EVNP+ +A  R
Sbjct: 66  DPTGVDIALFSAGGSVSKDYAPKFAAAGAVVIDNSSAFRYDDDVPLVVSEVNPDQVAN-R 124

Query: 123 NRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNG 182
            R IIANPNCST+QMLVAL P++   GIERINV TYQSVSG G++ ++EL  QT +LL+ 
Sbjct: 125 PRGIIANPNCSTMQMLVALAPLHRRYGIERINVATYQSVSGGGRSALEELGKQTGQLLSF 184

Query: 183 YPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVF 242
              +   F  QIAFN IP ID F+DNG+TKEEMK+VWETQKI  D SI+VNPT VRVPVF
Sbjct: 185 QEIDPQRFPVQIAFNLIPHIDDFLDNGFTKEEMKLVWETQKILGDSSILVNPTAVRVPVF 244

Query: 243 YGHAEAVHVETRAPIDAEQVMDMLEQTDGIEL---FRGADFPTQVRDAGGKDHVLVGRVR 299
           YGH+EAV +ETR  + A Q  ++L Q+ G+E+        +PT V  A G D V VGR+R
Sbjct: 245 YGHSEAVAIETRDKVTAAQARELLSQSPGVEVVDRHEAGGYPTPVTHASGTDAVYVGRIR 304

Query: 300 NDISHHSGINLWVVADNVRKGAATNAVQIAELLVRD 335
            D+SH  G+NLW+V+DN+RKGAA NAVQ+AEL+  +
Sbjct: 305 EDLSHPRGLNLWIVSDNIRKGAALNAVQLAELVAAE 340


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 359
Number of extensions: 15
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 342
Length adjustment: 28
Effective length of query: 309
Effective length of database: 314
Effective search space:    97026
Effective search space used:    97026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_057687228.1 ABB28_RS15230 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.10881.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10881.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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