Alignments for a candidate for dapA in Stenotrophomonas chelatiphaga DSM 21508

Align 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) (characterized)
to candidate WP_057508811.1 ABB28_RS11735 4-hydroxy-tetrahydrodipicolinate synthase

Query= BRENDA::Q9I4W3
         (292 letters)



>NCBI__GCF_001431535.1:WP_057508811.1
          Length = 297

 Score =  228 bits (580), Expect = 2e-64
 Identities = 123/279 (44%), Positives = 166/279 (59%), Gaps = 2/279 (0%)

Query: 2   IAGSMVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIR 61
           ++G + AL TPF A G LD D   +L+   L+ G   +V  G+TGE+ATL   E+ Q++ 
Sbjct: 3   LSGLITALATPFRADGSLDTDGWQRLLHLQLEGGVRGVVVAGSTGEAATLSDAEYDQLLA 62

Query: 62  RVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRH 121
             V+++ GR+PV+AGTG + T + +  T  A + GA   L+VTP Y +PTQ G+  H+R 
Sbjct: 63  SAVERIAGRVPVLAGTGLSGTAKTIEQTRRAAAAGATHALVVTPPYVRPTQAGLIAHYRA 122

Query: 122 IAEAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIERVGKDF 181
           +A+   +P +LYNVPGRT CDMLPETV  L+  PNI+GIKEA GD  R K ++   G DF
Sbjct: 123 VADHGGLPVVLYNVPGRTGCDMLPETVAELAAHPNIVGIKEAVGDNGRVKALLALRGDDF 182

Query: 182 LVYSGDDATAVELMLLGGKGNISVTANVAPRAMSDLCAAAMRGDAAAARAINDRLMPLHK 241
            + SGDD TA   +  G  G ISV +N  P A   +C  A   D  A  + + RL P H 
Sbjct: 183 AILSGDDGTAARSIQAGMDGLISVGSNALPGAYRRMCELAAAHDHDATESWDARLQPFHD 242

Query: 242 ALFIESNPIPVKWALHEMGLIPEGIRLPLTWLSPRCHEP 280
              +E NPIPVK  L  +G I   +RLPL  LS   H+P
Sbjct: 243 FCGVEPNPIPVKALLRRIG-IGHDLRLPLLPLS-AAHQP 279


Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 250
Number of extensions: 11
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 297
Length adjustment: 26
Effective length of query: 266
Effective length of database: 271
Effective search space:    72086
Effective search space used:    72086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_057508811.1 ABB28_RS11735 (4-hydroxy-tetrahydrodipicolinate synthase)
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))

Software error:

../bin/blast/fastacmd -i /tmp/list.11977.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11977.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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