Alignments for a candidate for dapB in Stenotrophomonas chelatiphaga DSM 21508

Align dihydrodipicolinate reductase; EC 1.3.1.26 (characterized)
to candidate WP_083492033.1 ABB28_RS13580 4-hydroxy-tetrahydrodipicolinate reductase

Query= CharProtDB::CH_002128
         (273 letters)



>NCBI__GCF_001431535.1:WP_083492033.1
          Length = 240

 Score =  155 bits (393), Expect = 6e-43
 Identities = 104/276 (37%), Positives = 153/276 (55%), Gaps = 44/276 (15%)

Query: 1   MHDANIRVAIAGAGGRMGRQLIQAA------LALEGVQLGAA-LEREGSSLLGSDAGELA 53
           M+   +R+ I GA GRMG+ L++ A      L + G   G A  +R    +    A EL 
Sbjct: 1   MNQTPLRLLIHGASGRMGQALLRLAAEHTDTLNVVGAYTGRAPAQRVVDGIPHFAAKELH 60

Query: 54  GAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQA 113
           GA                 FDV IDF+ PEG    LA C + G G+V GTTG  +A ++A
Sbjct: 61  GA---------------PPFDVAIDFSLPEGFDAILALCVERGAGLVSGTTGISQAQREA 105

Query: 114 IRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALA 173
           +  AA  I +V+A+NFS+GV V+ +L+E+AA+ +  + D +I+E+HH  K+DAPSGTAL 
Sbjct: 106 LDAAAKAIPLVWASNFSLGVAVLDELVERAAQALAGW-DCDIVESHHTRKLDAPSGTALT 164

Query: 174 MGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEI 233
           +G              A   R G T +       +A++RAGDIVGEH   F  +GER+E+
Sbjct: 165 LG--------------AAAGRGGATPQ-------YASLRAGDIVGEHLVQFTGLGERIEL 203

Query: 234 THKASSRMTFANGAVRSALWLSGKESGLFDMRDVLD 269
            H+A++R  FA GA+ +A  L  +  G + +RD+L+
Sbjct: 204 VHRATNRDIFARGALFAARQLGQRAPGSYRVRDLLN 239


Lambda     K      H
   0.319    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 217
Number of extensions: 16
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 240
Length adjustment: 24
Effective length of query: 249
Effective length of database: 216
Effective search space:    53784
Effective search space used:    53784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate WP_083492033.1 ABB28_RS13580 (4-hydroxy-tetrahydrodipicolinate reductase)
to HMM TIGR00036 (dapB: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.5739.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5739.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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