Alignments for a candidate for dapD in Stenotrophomonas chelatiphaga DSM 21508

Align 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase; EC 2.3.1.117 (characterized)
to candidate WP_057507868.1 ABB28_RS06515 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Query= SwissProt::P56220
         (274 letters)



>NCBI__GCF_001431535.1:WP_057507868.1
          Length = 352

 Score =  337 bits (863), Expect = 3e-97
 Identities = 171/272 (62%), Positives = 212/272 (77%), Gaps = 1/272 (0%)

Query: 1   MQQLQNVIESAFERRADITPANVDTVTREAVNQVIGLLDSGALRVAEKID-GQWVTHQWL 59
           +++L+  IESAFERRA +T   ++  T+  V +VI  L+SG  RVAE    G W  ++WL
Sbjct: 77  VEELKFGIESAFERRATLTLHELEGSTKPLVGRVIDGLESGEFRVAEPDGHGGWKVNEWL 136

Query: 60  KKAVLLSFRINDNKVMDGAETRYYDKVPMKFADYDEARFQKEGFRVVPPATVRQGAFIAR 119
           KKAVLL FR+ND  V+D     ++DKV  +FA +DEA+F++ G RVVP A  R+G +  +
Sbjct: 137 KKAVLLYFRVNDMAVVDARPAPFWDKVESRFAGHDEAKFRRAGVRVVPGAIARRGTYFGK 196

Query: 120 NTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIE 179
           + VLMPS+ NIGAYV EGTMVDTWATVGSCAQIG++ HLSGG GIGGVLEPLQA+PTIIE
Sbjct: 197 DVVLMPSFTNIGAYVGEGTMVDTWATVGSCAQIGQHCHLSGGAGIGGVLEPLQASPTIIE 256

Query: 180 DNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVVVSGNLP 239
           D+CFIGARSEVVEGV+V   SVI MGV+L QSTRIY+R TGEI YG +P  SVVVSG+LP
Sbjct: 257 DHCFIGARSEVVEGVVVGHHSVIGMGVFLSQSTRIYNRATGEISYGYIPPYSVVVSGSLP 316

Query: 240 SKDGSYSLYCAVIVKKVDAKTRGKVGINELLR 271
           S DG++SLYCAVIVK+VDA+TR K  +N+LLR
Sbjct: 317 SADGTHSLYCAVIVKQVDARTRSKTSVNDLLR 348


Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 304
Number of extensions: 5
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 352
Length adjustment: 27
Effective length of query: 247
Effective length of database: 325
Effective search space:    80275
Effective search space used:    80275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_057507868.1 ABB28_RS06515 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase)
to HMM TIGR00965 (dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117))

Software error:

../bin/blast/fastacmd -i /tmp/list.18375.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18375.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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