Alignments for a candidate for dapE in Stenotrophomonas chelatiphaga DSM 21508

Align Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 (characterized)
to candidate WP_057507870.1 ABB28_RS06525 succinyl-diaminopimelate desuccinylase

Query= SwissProt::Q9JYL2
         (381 letters)



>NCBI__GCF_001431535.1:WP_057507870.1
          Length = 375

 Score =  418 bits (1075), Expect = e-121
 Identities = 203/371 (54%), Positives = 259/371 (69%)

Query: 7   LELAKELISRPSVTPDDRDCQKLLAERLHKIGFAAEELHFGDTKNIWLRRGTKAPVVCFA 66
           L+LA +LI+RPSVTPDD  CQ+LLA RL   GF  E L  G+  N+W   G+  PV+   
Sbjct: 5   LDLACDLIARPSVTPDDAGCQQLLATRLQAAGFQCEHLRLGEVDNLWATHGSGGPVLVLL 64

Query: 67  GHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADMKTSIACFVTACERFVAKHPNHQGS 126
           GHTDVVPTGPV  W S PF P  RDG LYGRGAADMK S+A FV A E+FVA HP H G+
Sbjct: 65  GHTDVVPTGPVADWASDPFVPTVRDGVLYGRGAADMKGSVAAFVVAAEQFVAAHPEHPGT 124

Query: 127 IALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDMIKNGRRGSLSGN 186
           +A+L+TSDEEGDA+DG   V  +   R E ID+CI GEP++  +LGD+++ GRRGSLS  
Sbjct: 125 LAVLLTSDEEGDAIDGVRHVARLFAERGERIDWCITGEPSSTARLGDLLRVGRRGSLSAR 184

Query: 187 LTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNINGGTGATN 246
           L V+G QGH+AYP  A NP+H  APAL ELT   WDEG E FPPTS Q+SN++ GTGA N
Sbjct: 185 LLVQGVQGHVAYPDKARNPIHQAAPALAELTARRWDEGFESFPPTSLQVSNVHAGTGANN 244

Query: 247 VIPGELNVKFNFRFSTESTEAGLKQRVHAILDKHGVQYDLQWSCSGQPFLTQAGKLTDVA 306
           VIPG+L V FN R++       L+  + A+LD+HG++Y ++W  SG+PF T  G L  VA
Sbjct: 245 VIPGQLQVDFNLRYNPHWNADKLETEIAALLDRHGLEYTVKWHRSGEPFHTPEGTLRRVA 304

Query: 307 RAAIAETCGIEAELSTTGGTSDGRFIKAIAQELIELGPSNATIHQINENVRLNDIPKLSA 366
           R  + E  G   E ST GGTSD RFI  +  + IE+GP NA+IHQ++ENVR++D+ +L A
Sbjct: 305 REVLGEFAGAPPEESTGGGTSDARFIAPLGAQCIEVGPVNASIHQVDENVRVDDLEQLPA 364

Query: 367 VYEGILARLLA 377
           +Y+ ++ RLLA
Sbjct: 365 LYQRLIERLLA 375


Lambda     K      H
   0.317    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 444
Number of extensions: 15
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 375
Length adjustment: 30
Effective length of query: 351
Effective length of database: 345
Effective search space:   121095
Effective search space used:   121095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_057507870.1 ABB28_RS06525 (succinyl-diaminopimelate desuccinylase)
to HMM TIGR01246 (dapE: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.14551.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14551.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.