Align aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (characterized)
to candidate WP_057507033.1 ABB28_RS02115 bifunctional aspartate kinase/diaminopimelate decarboxylase
Query= reanno::Dyella79:N515DRAFT_4002 (853 letters) >NCBI__GCF_001431535.1:WP_057507033.1 Length = 864 Score = 863 bits (2229), Expect = 0.0 Identities = 474/860 (55%), Positives = 589/860 (68%), Gaps = 15/860 (1%) Query: 1 MKFGGTSVATLPRWQNIRELVASRRAE-GARVLVVVSALTGITDALKQMC-AQEDKGKRV 58 +KFGGTSV+ RW I +L R E G+RVLVVVSAL+G+T+ L + D RV Sbjct: 13 LKFGGTSVSRRHRWDTIGKLAKKRAEETGSRVLVVVSALSGVTNELTAIADGAADSRARV 72 Query: 59 EAARAIAQRHYDLLDHMQLAVPATLAERLSELAMLAEDGPGAMGELAWAALVQAHGELMS 118 A + +RH LD ++L A L ERL+ L L +D A L W A V GEL+S Sbjct: 73 AA---LVERHQAFLDELELP-RAVLGERLAALQALLDDARAAARTLDWQAEVLGQGELLS 128 Query: 119 SALGAAFLSHAGLPTEWLDARDCLAAVA-LPNQNERTKLLSAMVEARPDPALNARL-AEL 176 S++GAA+L GL W+DAR L A+ LPNQ+ ++ LS + + D A R A+ Sbjct: 129 SSIGAAYLHQNGLDMGWMDARQWLDALPPLPNQSPWSQRLSVNCQWKSDEAWAQRFRAQP 188 Query: 177 GEVFITQGFIAREAQGRTVLLGRGGSDTSASYFGALLKAQRVEIWTDVAGMFTANPRQVP 236 + ITQGFIAR A G T +LGRGGSDTSA+YFGALL A RVEIWTDV GMF+ANP+ VP Sbjct: 189 TRLLITQGFIARHADGGTAILGRGGSDTSAAYFGALLGASRVEIWTDVPGMFSANPKDVP 248 Query: 237 GARLLQRLDYEEAQEIASTGAKVLHPRCLSPLREPRVPMLIKDTNRPELEGTVIGPEVRE 296 ARLL RLDY EAQEIA+TGAKVLHPR + P R+ VPM I DT RPEL GT I Sbjct: 249 DARLLTRLDYYEAQEIATTGAKVLHPRSIKPCRDAGVPMAILDTERPELPGTSIDGSAAP 308 Query: 297 HAPSVKAISARKGITLVSMESVGMWQQVGFLADVFAQFKQHGLSVDLIGSAETNVTVSLD 356 P VKAIS R GI LVSME +GMWQQVGFLADVF FK+HGLSVDLIGSAETNVTVSLD Sbjct: 309 -VPGVKAISRRNGIVLVSMEGIGMWQQVGFLADVFGLFKKHGLSVDLIGSAETNVTVSLD 367 Query: 357 PTENLLDSDAIAALASDLAKVCRVKVIAPCAAITLVGRGMRSMLHTLSGVLAEFGQIRVH 416 P+ENL+++D +AAL++DL+++C+VK+I PCAAITLVGRGMRS+LH LS V A FG+ RVH Sbjct: 368 PSENLVNTDVLAALSADLSQICKVKIIVPCAAITLVGRGMRSLLHKLSDVWATFGRERVH 427 Query: 417 LISQSSNNLNLTFVVDENVVDDLLPHLHELLIAAGALRTDDSALFGPSWQALYGSGEVAA 476 +ISQSSN+LNLTFV+DE D LLP LH LI +GA+ +++A+FGP W+ + +G V Sbjct: 428 MISQSSNDLNLTFVIDETDADGLLPILHAELIDSGAMPVEETAVFGPRWREI--AGTVRP 485 Query: 477 PAASWWRTAERERLLRLGAERTPRYVYHLPTVRQQARELKSLGAVDRLHYAVKANTHPAI 536 WWR +R LL+L TPRYVYHLPTVR +AR L ++ +D+ +YA+KAN+HPAI Sbjct: 486 RGTPWWR-GQRAHLLQLAEAGTPRYVYHLPTVRARARALAAITPIDQRYYAIKANSHPAI 544 Query: 537 LKALAEEGFGFECVSPGELKAVLAAVPESAP--LLFTPNFAPRADYEWALTTRATISLDA 594 L+ L EGFG ECVS GELK V +P +P +LFTP+F PR ++E A T+++D Sbjct: 545 LETLEAEGFGLECVSHGELKHVFNVLPGLSPRRVLFTPSFCPREEFEAAFALGVTVTVDN 604 Query: 595 LYQLENWGELFRGREIVLRVDLGRGLGHHEKVRTGGSGSKFGLPVELVDSFLRLADAHGV 654 + L+ W +LFR RE+ LRVDLGRG GHH KVRTGG SKFGLP+ VD F+R A G Sbjct: 605 VEALQRWPDLFRNRELWLRVDLGRGEGHHAKVRTGGKESKFGLPMARVDEFVRAATELGT 664 Query: 655 IVRGLHAHLGSGILDEGHWGEVYGQLASLAERIGSVAFLDIGGGLGVPSHPGEARLDIAA 714 + GLHAHLGSG+ HW + +LA A RIG+V +DIGGG+ +P + D+ A Sbjct: 665 TIVGLHAHLGSGVETAQHWRLMCDELAGFARRIGTVQTIDIGGGMPIPYSEEDEPFDLEA 724 Query: 715 LDRVLRSVKAAYPHYQLWMEPGRYLVADAGVLLARVTQQKGKGSWRYLGVDTGMNSLIRP 774 L VKA +P ++L +EPGRYLVA++GVLL R TQ K R +G+D GMN+LIRP Sbjct: 725 WAEGLAEVKAVHPAFRLAIEPGRYLVAESGVLLTRCTQVVEKEGVRRVGLDAGMNTLIRP 784 Query: 775 ALYEAWHEIVNLTRLDEPATGLFQVVGPICESGDVLGTDRRLP-EAQEGDVVLVAQAGAY 833 ALY+AWH+I NL+R A F VVGPICES DV G R+LP DV++VA AGAY Sbjct: 785 ALYDAWHDIENLSRQGGYAEAAFDVVGPICESSDVFGKRRKLPASTAPDDVMVVADAGAY 844 Query: 834 GKVMSSPYNMRDEAEEVILD 853 G VM+S YN R E IL+ Sbjct: 845 GYVMASTYNQRAMPREDILE 864 Lambda K H 0.319 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1866 Number of extensions: 87 Number of successful extensions: 9 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 853 Length of database: 864 Length adjustment: 42 Effective length of query: 811 Effective length of database: 822 Effective search space: 666642 Effective search space used: 666642 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (26.2 bits)
Align candidate WP_057507033.1 ABB28_RS02115 (bifunctional aspartate kinase/diaminopimelate decarboxylase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.16025.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16025.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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