Alignments for a candidate for metB in Stenotrophomonas chelatiphaga DSM 21508

Align Cystathionine gamma-synthase; CGS; O-succinylhomoserine (thiol)-lyase; EC 2.5.1.48 (characterized)
to candidate WP_057508709.1 ABB28_RS11200 O-succinylhomoserine (thiol)-lyase

Query= SwissProt::P00935
         (386 letters)



>NCBI__GCF_001431535.1:WP_057508709.1
          Length = 412

 Score =  432 bits (1110), Expect = e-125
 Identities = 222/377 (58%), Positives = 273/377 (72%), Gaps = 5/377 (1%)

Query: 5   QATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAEL 64
           + T AVR+G++ D  YG V PPI LSS ++F GF   R +DY+R GNPTRD++  ALAEL
Sbjct: 13  RTTAAVRAGIDRDSAYGAVTPPIVLSSNFSFDGFGNKRQYDYTRSGNPTRDLLGEALAEL 72

Query: 65  EGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ 124
           EGGAG V+T TGM AI LV    L P D LV PHD YGGS+RLF++LA +G ++++  D 
Sbjct: 73  EGGAGGVVTATGMGAISLVLQALLGPEDTLVVPHDAYGGSWRLFNALAGKGQFKLVTADL 132

Query: 125 GDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNP 184
            D ++L  ALA  PKLVLVE+PSNPLLR+ D+  +   A + GA+ VVDNTFLSPALQ P
Sbjct: 133 TDPRSLAQALAGSPKLVLVETPSNPLLRITDLRFVIDAAHKAGALVVVDNTFLSPALQQP 192

Query: 185 LALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRG 244
           LA GADLVLHS TKY+NGHSDVV G V+A+DP++  +L WWAN +G+TG  FD++L LRG
Sbjct: 193 LAFGADLVLHSTTKYINGHSDVVGGAVVARDPELAQQLTWWANALGLTGSPFDAFLTLRG 252

Query: 245 LRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFEL 304
           LRTL  R+ + Q N  AIV  L     V  +Y+P L ++ GH IAARQQ GFGAMLSFEL
Sbjct: 253 LRTLDARLRVHQENTAAIVPLLAAHRAVSAVYYPGLADHPGHAIAARQQSGFGAMLSFEL 312

Query: 305 ---DGDE--QTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETL 359
              DGD+    +R F+ GL  FTLAESLGGVESL++H ATMTHA M  +AR AAGISE L
Sbjct: 313 VTCDGDDPHAAVRAFVDGLQYFTLAESLGGVESLVAHPATMTHAAMTVQARQAAGISEGL 372

Query: 360 LRISTGIEDGEDLIADL 376
           LR+S GIE   DL+ADL
Sbjct: 373 LRLSVGIESERDLLADL 389


Lambda     K      H
   0.319    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 469
Number of extensions: 13
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 412
Length adjustment: 31
Effective length of query: 355
Effective length of database: 381
Effective search space:   135255
Effective search space used:   135255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_057508709.1 ABB28_RS11200 (O-succinylhomoserine (thiol)-lyase)
to HMM TIGR02080 (metB: O-succinylhomoserine (thiol)-lyase (EC 2.5.1.48))

Software error:

../bin/blast/fastacmd -i /tmp/list.30435.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30435.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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