Align methionine synthase; EC 2.1.1.13 (characterized)
to candidate WP_057507948.1 ABB28_RS06945 methionine synthase
Query= CharProtDB::CH_090726
(1227 letters)
>NCBI__GCF_001431535.1:WP_057507948.1
Length = 894
Score = 1119 bits (2894), Expect = 0.0
Identities = 558/893 (62%), Positives = 692/893 (77%), Gaps = 12/893 (1%)
Query: 341 RLSGLEPLNIGEDSLFVNVGERTNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDI 400
RLSGLEPL I D LF+N+GERTNVTGSA+F++L+KEE+Y EA+DVARQQV +GAQI+D+
Sbjct: 8 RLSGLEPLVITPDLLFINIGERTNVTGSAQFRKLVKEERYEEAVDVARQQVASGAQILDV 67
Query: 401 NMDEGMLDAEAAMVRFLNLIAGEPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMK 460
NMDEG++D+EAAM R+LNLI EPDIAR+P+M+DSSKW VIE GLKC+QGK +VNSIS+K
Sbjct: 68 NMDEGLIDSEAAMTRYLNLIMSEPDIARIPVMVDSSKWSVIEAGLKCLQGKSVVNSISLK 127
Query: 461 EGVDAFIHHAKLLRRYGAAVVVMAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDII 520
EG D F HA+ + RYGAA VVMAFDE GQADT ARK+EIC RAY+IL +E+GFPP+DII
Sbjct: 128 EGEDLFREHARKVLRYGAAAVVMAFDEAGQADTCARKVEICTRAYRILVDEIGFPPQDII 187
Query: 521 FDPNIFAVATGIEEHNNYAQDFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIH 580
FDPNIFAVATGIEEH+NYA DFI A IKR LPH +SGGVSNVSFSFRGN+ VR+AIH
Sbjct: 188 FDPNIFAVATGIEEHDNYAVDFIEATRIIKRTLPHCHVSGGVSNVSFSFRGNETVRQAIH 247
Query: 581 AVFLYYAIRNGMDMGIVNAGQLAIYDDLPAELRDAVEDVILNRRDDGTERLLELAEKYRG 640
+VFLY+AI GMDMGIVNAG + IYDDL AELR+ VEDVILNRR DGTERLLE+AE+Y+G
Sbjct: 248 SVFLYHAIAAGMDMGIVNAGAMPIYDDLDAELRERVEDVILNRRADGTERLLEIAERYKG 307
Query: 641 SKTDDTANAQQAEWRSWEVNKRLEYSLVKGITEFIEQDTEEARQQATRPIEVIEGPLMDG 700
SK A + WR V RL ++LV G+ ++EQDTEEARQ +TRP++VIEGPLM+G
Sbjct: 308 SK--GAARVEDLAWREKPVTDRLAHALVHGLDAWVEQDTEEARQASTRPLDVIEGPLMNG 365
Query: 701 MNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFIEASK----EQGKTNGKMVIATVKG 756
MNVVGDLFG GKMFLPQVVKSARVMK+AVAYL P+IEA K + ++NGK+++ATVKG
Sbjct: 366 MNVVGDLFGAGKMFLPQVVKSARVMKKAVAYLLPYIEAEKLRSGDTARSNGKIIMATVKG 425
Query: 757 DVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVN 816
DVHDIGKNIVGVVL CNN+E++DLGVMVPA+KIL A+ NAD+IGLSGLITPSL+EM +
Sbjct: 426 DVHDIGKNIVGVVLACNNFEVIDLGVMVPAQKILDAARAENADIIGLSGLITPSLEEMSH 485
Query: 817 VAKEMERQGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNASRTVGVVAALLSDTQR 876
VA+EM+RQGF +PL+IGGATTS+AHTA+KI+ +Y PTV+V++ASR VGV +L+S R
Sbjct: 486 VAREMQRQGFELPLMIGGATTSRAHTALKIDPHYKAPTVWVKDASRAVGVAQSLISHDLR 545
Query: 877 DDFVARTRKEYETVRIQHGRKKPRTPPVTLEAARDNDFAFDWQAYTPPVAHRLGVQEV-E 935
FVA +Y +R++H + V+L AR F W Y PP ++ G+ +
Sbjct: 546 AAFVAANEADYADIRLRHRNRGDAKRLVSLAHARGQRFDGGWADYVPPAPNQPGLHVFDD 605
Query: 936 ASIETLRNYIDWTPFFMTWSLAGKYPRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNP 995
+ L +YIDWTPFF W LAGKYP IL DE+VG +A L++DA MLD++ E+ L
Sbjct: 606 YPLAELVDYIDWTPFFQAWELAGKYPAILTDEIVGSQASELYRDARQMLDRIVKERWLQA 665
Query: 996 RGVVGLFPANRVGDDIEIYRDETRTHVINVSHHLRQQTEKTG-FANYCLADFVAPKLSGK 1054
R V GL+PAN VGDD+ + + + H LRQQ +K ++CLADF+AP SG+
Sbjct: 666 RAVFGLWPANSVGDDVRVQHPDGEATL----HFLRQQVDKPAERPDFCLADFIAPADSGR 721
Query: 1055 ADYIGAFAVTGGLEEDALADAFEAQHDDYNKIMVKALADRLAEAFAEYLHERVRKVYWGY 1114
D+IGAFAVT G+ DA FEA HDDYN I++KALADR AEA AE LH+RVRK +WG+
Sbjct: 722 QDWIGAFAVTAGIGIDAHVARFEAAHDDYNAILLKALADRFAEALAERLHQRVRKEFWGH 781
Query: 1115 APNENLSNEELIRENYQGIRPAPGYPACPEHTEKATIWELLEVEKHTGMKLTESFAMWPG 1174
A +E L N+ LI E Y GIRPAPGYPACPEH+EK T++ LL+ + + GM+LTESFAM P
Sbjct: 782 ANDETLDNDALIAEKYSGIRPAPGYPACPEHSEKDTLFRLLDAQGNAGMQLTESFAMLPT 841
Query: 1175 ASVSGWYFSHPDSKYYAVAQIQRDQVEDYARRKGMSVTEVERWLAPNLGYDAD 1227
A+VSG+YFSHP S+Y+ V ++ R+QV DYA+RKG+ + ERWLA NL YD +
Sbjct: 842 AAVSGYYFSHPQSQYFVVGRVSREQVTDYAKRKGVDRVQAERWLASNLDYDPE 894
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2638
Number of extensions: 114
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 1227
Length of database: 894
Length adjustment: 45
Effective length of query: 1182
Effective length of database: 849
Effective search space: 1003518
Effective search space used: 1003518
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align methionine synthase; EC 2.1.1.13 (characterized)
to candidate WP_057507947.1 ABB28_RS06940 homocysteine S-methyltransferase family protein
Query= CharProtDB::CH_090726
(1227 letters)
>NCBI__GCF_001431535.1:WP_057507947.1
Length = 368
Score = 411 bits (1056), Expect = e-119
Identities = 204/347 (58%), Positives = 253/347 (72%), Gaps = 20/347 (5%)
Query: 8 LRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFAD--------------------WPC 47
L + L ERIL++DG MGTMIQ + L E D+RGERF
Sbjct: 15 LLSALRERILIIDGAMGTMIQRHGLQEDDYRGERFIGGVDTRAAGHVHGAGCDHGPVQEQ 74
Query: 48 DLKGNNDLLVLSKPEVIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAA 107
DLKGNNDLL+L++PE+IA IH Y +AGAD++ETNTFN+T+++ ADY +E L E+N A
Sbjct: 75 DLKGNNDLLLLTRPEIIAGIHTEYLQAGADLVETNTFNATSVSQADYHLEHLVYELNKAG 134
Query: 108 AKLARACADEWTARTPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYREST 167
A +ARAC D A TP+KPR+V GVLGPT+RTASISPDVNDP FRN +FD L YRE+
Sbjct: 135 AAVARACCDAMEATTPDKPRFVIGVLGPTSRTASISPDVNDPGFRNTSFDELRGTYREAI 194
Query: 168 KALVEGGADLILIETVFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQT 227
L++GGAD +++ET+FDTLNAKAA+FAV+ F+A G LP+MISGTITDASGRTLSGQT
Sbjct: 195 DGLIDGGADTLMVETIFDTLNAKAALFAVEEAFDARGARLPVMISGTITDASGRTLSGQT 254
Query: 228 TEAFYNSLRHAEALTFGLNCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLD 287
EAF+ SL HA L+ GLNCALG D +R +V+ LS++A CYV+AHPNAGLPNAFGEYD
Sbjct: 255 AEAFHASLAHARPLSIGLNCALGADAMRPHVETLSQVAGCYVSAHPNAGLPNAFGEYDET 314
Query: 288 ADTMAKQIREWAQAGFLNIVGGCCGTTPQHIAAMSRAVEGLAPRKLP 334
+ MA + +A G LN+VGGCCG+TP HI A++ AV GL PR LP
Sbjct: 315 PEEMAATLHGFATDGLLNLVGGCCGSTPAHIRAIAEAVAGLPPRALP 361
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1109
Number of extensions: 44
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 1227
Length of database: 368
Length adjustment: 38
Effective length of query: 1189
Effective length of database: 330
Effective search space: 392370
Effective search space used: 392370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Align candidate WP_057507948.1 ABB28_RS06945 (methionine synthase)
to HMM TIGR02082 (metH: methionine synthase (EC 2.1.1.13))
../bin/blast/fastacmd -i /tmp/list.22740.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22740.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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