Alignments for a candidate for cmutase in Stenotrophomonas chelatiphaga DSM 21508

Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate WP_057506775.1 ABB28_RS00665 prephenate dehydratase

Query= SwissProt::P27603
         (365 letters)



>NCBI__GCF_001431535.1:WP_057506775.1
          Length = 398

 Score =  330 bits (847), Expect = 3e-95
 Identities = 173/360 (48%), Positives = 242/360 (67%), Gaps = 7/360 (1%)

Query: 7   LKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAV-FYRPEREAWVLKHIM 65
           L  +R +ID +D  I  LI+ERAR A +V + K     K   AV +YRPEREA VL+ ++
Sbjct: 43  LADVRGKIDQIDRDIQSLIAERARFAHQVGKAKG----KLAAAVDYYRPEREAQVLRMVV 98

Query: 66  ELNKGPLDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVISKPMA 125
           + N+GPL +E +  ++REIMS+CLA ++PL++ YLGPEGTFSQ A LKHFG S +  PMA
Sbjct: 99  DRNEGPLSDELLVHVYREIMSACLAQQEPLKIGYLGPEGTFSQQAVLKHFGRSALGLPMA 158

Query: 126 AIDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHLLVGET 185
           +I+EVF+EV AG  +FGVVPVENS +G +  TLD FL  ++ ICGE ELR+  +++   +
Sbjct: 159 SIEEVFQEVEAGNADFGVVPVENSGQGTIQITLDMFLTSNLKICGEAELRVQQYIM-SRS 217

Query: 186 TKTDRITRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIAGDMAA 245
              + I RIY+H QS  Q   WL A+ P  E++ VSSNA+ A+R ++  ++AAI G+ A 
Sbjct: 218 GHLEDIERIYAHPQSFMQTSAWLRANLPKAEKIPVSSNAEGARRARNADDAAAIGGENAG 277

Query: 246 QLYGLSKLAEK-IEDRPVNSTRFLIIGSQEVPPTGDDKTSIIVSMRNKPGALHELLMPFH 304
            +Y L K+  K I++   N+TRFL+IG    P +G D+TS++V + +KPGAL ++L PF 
Sbjct: 278 HVYNLKKVVTKPIQNDADNTTRFLVIGRSLFPSSGHDRTSVLVLIHDKPGALFDVLSPFA 337

Query: 305 SNGIDLTRIETRPSRSGKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGSYPKAV 364
            +GI + RIE+RPS  GKW Y FFID  GH  D  ++  L ++   A  +KVLGSYP AV
Sbjct: 338 RHGISMNRIESRPSHHGKWEYGFFIDLSGHIDDAPMQAALAELEGHAAQIKVLGSYPVAV 397


Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 385
Number of extensions: 17
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 398
Length adjustment: 30
Effective length of query: 335
Effective length of database: 368
Effective search space:   123280
Effective search space used:   123280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate WP_057506775.1 ABB28_RS00665 (prephenate dehydratase)
to HMM TIGR01807 (pheA: chorismate mutase (EC 5.4.99.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.26617.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26617.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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