Alignments for a candidate for proA in Stenotrophomonas chelatiphaga DSM 21508

Align Gamma-glutamyl phosphate reductase; GPR; Glutamate-5-semialdehyde dehydrogenase; Glutamyl-gamma-semialdehyde dehydrogenase; GSA dehydrogenase; EC 1.2.1.41 (characterized)
to candidate WP_057687245.1 ABB28_RS15340 glutamate-5-semialdehyde dehydrogenase

Query= SwissProt::P07004
         (417 letters)



>NCBI__GCF_001431535.1:WP_057687245.1
          Length = 418

 Score =  354 bits (908), Expect = e-102
 Identities = 189/415 (45%), Positives = 270/415 (65%), Gaps = 4/415 (0%)

Query: 2   LEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEA 61
           +E    A + A+  +A L + ++  +L+ +A  LE+ +  IL ANA+D+A AR  G+  A
Sbjct: 4   IEGQARACRAAATVVAGLDTVQRTALLQSMAAALESHAGQILAANARDLAAARDKGIGSA 63

Query: 62  MLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYEA 121
           MLDRL L P RL  +A  +R V  L DPVGQV    V  +G+R+++ RVPLGVI +IYEA
Sbjct: 64  MLDRLMLDPPRLFAMAQALRDVAGLPDPVGQVTRDDVRPNGIRVQKVRVPLGVIAMIYEA 123

Query: 122 RPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPDR 181
           RPNVT + A+LCLK GN VILRGG E   +N A  A +  AL + G+P  AV  + +  R
Sbjct: 124 RPNVTAEAAALCLKAGNGVILRGGSEAIHSNTAIAAALGSALPAHGVPEAAVTVLTDLRR 183

Query: 182 ALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESVEIAEALKV 241
             + E+L++   ID+ IPRGG GL +   E + +PVI    GVCH++VD S +I +A+ +
Sbjct: 184 EAMLELLQLHDLIDLAIPRGGEGLIRFVAEHARVPVIKHYKGVCHLFVDASADIDQAIDL 243

Query: 242 IVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAGPAKV 301
           +V+ K  RPS CN++ETLLV++++A  FLP   + +A  GV L ADA +L  L    A  
Sbjct: 244 LVDGKCSRPSACNSLETLLVHRDVAAEFLPRAGQALAARGVELRADALSLPLL----AGS 299

Query: 302 VAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVDS 361
            A   E+Y  EFL L + VK+V DL+ AI HIR + + H++ I TRD  +A+RF++ + S
Sbjct: 300 TAATDEDYAAEFLDLVIAVKVVDDLEAAITHIRRYTSDHTEVIATRDADHAERFIHALQS 359

Query: 362 SAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDYTIR 416
           + V VNAS+RF+DGGQ GLG+E+ +ST +LHA GPMGLEALT  +++  G+  +R
Sbjct: 360 AVVMVNASSRFSDGGQLGLGSEIGISTTRLHAYGPMGLEALTVERFVVRGEGQVR 414


Lambda     K      H
   0.317    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 437
Number of extensions: 18
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 418
Length adjustment: 32
Effective length of query: 385
Effective length of database: 386
Effective search space:   148610
Effective search space used:   148610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_057687245.1 ABB28_RS15340 (glutamate-5-semialdehyde dehydrogenase)
to HMM TIGR00407 (proA: glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41))

Software error:

../bin/blast/fastacmd -i /tmp/list.22921.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22921.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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