Alignments for a candidate for proB in Stenotrophomonas chelatiphaga DSM 21508

Align glutamate 5-kinase (EC 2.7.2.11) (characterized)
to candidate WP_057687247.1 ABB28_RS15350 glutamate 5-kinase

Query= BRENDA::P0A7B5
         (367 letters)



>NCBI__GCF_001431535.1:WP_057687247.1
          Length = 387

 Score =  269 bits (687), Expect = 1e-76
 Identities = 160/372 (43%), Positives = 224/372 (60%), Gaps = 10/372 (2%)

Query: 1   MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHL 60
           + D +  V+K+G+S+L      L+  H + L +  +    AG  +VIV+SGA+AAGR  L
Sbjct: 17  LPDWRRAVLKVGSSLLAADGGGLSPRHALGLAQFVSANVLAGREVVIVSSGAVAAGRAIL 76

Query: 61  GYPELP-ATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARD 119
              E   A +A++Q LAA+GQ++LI LW++ F      V Q+LLT  D+ +R R+LNAR 
Sbjct: 77  PRVEAAGAAMAARQALAALGQAQLIGLWQRFFER---PVAQVLLTHDDLRNRRRYLNARA 133

Query: 120 TLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADP 179
           TL  LL    +PV+NEND V+  E+K+GDNDNL+A  A L  AD L + TD  GLY+ADP
Sbjct: 134 TLNELLRLGALPVVNENDTVSVDELKLGDNDNLAATVAALVDADVLFIATDIDGLYSADP 193

Query: 180 RSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKP 239
           R +  A+ I  V  +   + A+AG S S  GTGGM TKL+AA  A R GI+TI+  G   
Sbjct: 194 RRDASAQPIPQVQELTADVLAMAGGSGSSAGTGGMRTKLEAASKAARLGIETILFNGRNG 253

Query: 240 GVIGDVMEGISVGTLFHAQATPLENRKRWIFGAP-PAGEITVDEGATAAILERGSSLLPK 298
            V+  + +G   GT  HA  +    RK W+  AP   G I +D+GA  A+  +G+SLLP 
Sbjct: 254 DVVRALAQGRLHGTRLHASQSREAARKYWLRHAPVEPGVIWIDDGAVQAMRGKGASLLPG 313

Query: 299 GIKSVTGNFSRGEVIRICNLEG-----RDIAHGVSRYNSDALRRIAGHHSQEIDAILGYE 353
           GI    G F RG+++ I    G       +A GV++Y +  +RRIAG HS++I+A LGY 
Sbjct: 314 GITGADGEFRRGDMVEIRCRPGAGGGEASVARGVTQYAASDIRRIAGRHSRDIEAALGYN 373

Query: 354 YGPVAVHRDDMI 365
           YG   VHRDD++
Sbjct: 374 YGGNVVHRDDLV 385


Lambda     K      H
   0.318    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 375
Number of extensions: 22
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 387
Length adjustment: 30
Effective length of query: 337
Effective length of database: 357
Effective search space:   120309
Effective search space used:   120309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_057687247.1 ABB28_RS15350 (glutamate 5-kinase)
to HMM TIGR01027 (proB: glutamate 5-kinase (EC 2.7.2.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.4190.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4190.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.