Alignments for a candidate for proC in Stenotrophomonas chelatiphaga DSM 21508

Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate WP_057506907.1 ABB28_RS01365 pyrroline-5-carboxylate reductase

Query= SwissProt::P22008
         (273 letters)



>NCBI__GCF_001431535.1:WP_057506907.1
          Length = 273

 Score =  256 bits (655), Expect = 3e-73
 Identities = 149/271 (54%), Positives = 181/271 (66%), Gaps = 5/271 (1%)

Query: 1   MSTPRIAFIGAGNMAASLIGGLRAQGVPAAQIRASDPGAEQRAKIAGEFAIDVVESNAEA 60
           M+   IAFIG GNMA SLI GL  QG PAA I  ++P A  R  +A +F +    + +EA
Sbjct: 1   MTDSSIAFIGGGNMARSLIAGLVRQGTPAADIHVAEPVAALRDALAADFGVSPHATASEA 60

Query: 61  VADADVVVLSVKPQAMKAVC---QALAPALKPEQLIVSIAAGIPCASLEAWLGQPRPVVR 117
            A A   +L+VKPQ ++ VC    ALA A +P  L+VSIAAGI  A L+ WLG    VVR
Sbjct: 61  AAQAGAWLLAVKPQVLREVCATLHALATAKRP--LLVSIAAGITSAQLDRWLGGNIAVVR 118

Query: 118 CMPNTPALLRQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAVSGSGP 177
            MPNTPALL  G +GLYA AQV+AAQ  QA ++LS+ G  +W+DDEA +D+VTAVSGSGP
Sbjct: 119 AMPNTPALLGAGVTGLYATAQVTAAQRAQADRVLSSAGRTVWVDDEALMDSVTAVSGSGP 178

Query: 178 AYFFLLMQAMTDAGEKLGLSRETASRLTLQTALGAAQMALSSEVEPAELRRRVTSPNGTT 237
           AY FLL +AM  AG   GL  E A  L  QT LGA++M   +   PAELRRRVTSP GTT
Sbjct: 179 AYVFLLAEAMEAAGIAQGLPPEAARTLVQQTLLGASRMLDEAGEAPAELRRRVTSPGGTT 238

Query: 238 EAAIKSFQANGFEALVEQALNAASQRSAELA 268
            AAI++FQA GFE LV +AL AA  R  EL+
Sbjct: 239 HAAIEAFQAGGFEPLVAKALAAAQARGRELS 269


Lambda     K      H
   0.315    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 238
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 273
Length adjustment: 25
Effective length of query: 248
Effective length of database: 248
Effective search space:    61504
Effective search space used:    61504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate WP_057506907.1 ABB28_RS01365 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.19698.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19698.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.