Alignments for a candidate for serC in Stenotrophomonas chelatiphaga DSM 21508

Align phosphoserine transaminase (EC 2.6.1.52) (characterized)
to candidate WP_057506774.1 ABB28_RS00660 3-phosphoserine/phosphohydroxythreonine transaminase

Query= BRENDA::Q96255
         (430 letters)



>NCBI__GCF_001431535.1:WP_057506774.1
          Length = 361

 Score =  366 bits (939), Expect = e-106
 Identities = 175/358 (48%), Positives = 248/358 (69%)

Query: 72  RVFNFAAGPATLPENVLLKAQADLYNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRQLLE 131
           R +NF+AGPA LPE VL +AQ ++ +W G+G S++EMSHRG EF+++   AE+DLRQLL 
Sbjct: 3   RAYNFSAGPAALPEVVLRQAQEEMLDWHGAGASIVEMSHRGPEFMAVAAAAEADLRQLLS 62

Query: 132 IPQEYSVLFLQGGATTQFAALPLNLCKSDDTVDFVVTGSWGDKAVKEAKKYCKTNVIWSG 191
           +P +Y+VLFL GGATTQ A +P+N        D+V+TG WG  AVK+A  Y   ++  S 
Sbjct: 63  VPDDYAVLFLPGGATTQQALIPMNFASPGQRADYVLTGHWGKTAVKQASPYVSAHIAASS 122

Query: 192 KSEKYTKVPSFEELEQTPDAKYLHICANETIHGVEFKDYPVPKNGFLVADMSSNFCSKPV 251
           ++  +  +P+  + + +PDA Y+HI ANETIHGVEF+D P   +  LVAD SS+  S+P+
Sbjct: 123 EANAFRDIPARADWQLSPDAAYVHITANETIHGVEFRDIPDTGDVPLVADFSSSIASEPL 182

Query: 252 DVSKFGVIYGGAQKNVGPSGVTIVIIRKDLIGNAQDITPVMLDYKIHDENSSLYNTPPCF 311
           D+S+FGVIY GAQKN+GP G+ +VIIR+DL+         +  Y  H    S+ NTPP +
Sbjct: 183 DISRFGVIYAGAQKNLGPVGIAVVIIRRDLLERTGQPRADIFTYASHAARDSMLNTPPTW 242

Query: 312 GIYMCGLVFEDLLEQGGLKEVEKKNQRKADLLYNAIEESNGFFRCPVEKSVRSLMNVPFT 371
             Y+ GLVF+ +L +GG+ E  ++N  KA L+Y+AI+ S GF+R  V  S RS MN+PF 
Sbjct: 243 NWYLAGLVFKWMLAEGGVVEFARRNAAKAALVYSAIDASGGFYRNEVAVSARSRMNIPFF 302

Query: 372 LEKSELEAEFIKEAAKEKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQAKH 429
           L  ++L+A F+ +A    ++ LKGH++VGG+RAS+YNA+P+AG E LVAFM DFQ +H
Sbjct: 303 LPSTDLDARFVADAKAAGLLALKGHKAVGGIRASLYNAIPVAGAEALVAFMADFQQRH 360


Lambda     K      H
   0.316    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 384
Number of extensions: 7
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 361
Length adjustment: 31
Effective length of query: 399
Effective length of database: 330
Effective search space:   131670
Effective search space used:   131670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_057506774.1 ABB28_RS00660 (3-phosphoserine/phosphohydroxythreonine transaminase)
to HMM TIGR01364 (serC: phosphoserine transaminase (EC 2.6.1.52))

Software error:

../bin/blast/fastacmd -i /tmp/list.28782.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28782.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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