Align aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (characterized)
to candidate WP_057507033.1 ABB28_RS02115 bifunctional aspartate kinase/diaminopimelate decarboxylase
Query= reanno::Dyella79:N515DRAFT_4002
(853 letters)
>NCBI__GCF_001431535.1:WP_057507033.1
Length = 864
Score = 863 bits (2229), Expect = 0.0
Identities = 474/860 (55%), Positives = 589/860 (68%), Gaps = 15/860 (1%)
Query: 1 MKFGGTSVATLPRWQNIRELVASRRAE-GARVLVVVSALTGITDALKQMC-AQEDKGKRV 58
+KFGGTSV+ RW I +L R E G+RVLVVVSAL+G+T+ L + D RV
Sbjct: 13 LKFGGTSVSRRHRWDTIGKLAKKRAEETGSRVLVVVSALSGVTNELTAIADGAADSRARV 72
Query: 59 EAARAIAQRHYDLLDHMQLAVPATLAERLSELAMLAEDGPGAMGELAWAALVQAHGELMS 118
A + +RH LD ++L A L ERL+ L L +D A L W A V GEL+S
Sbjct: 73 AA---LVERHQAFLDELELP-RAVLGERLAALQALLDDARAAARTLDWQAEVLGQGELLS 128
Query: 119 SALGAAFLSHAGLPTEWLDARDCLAAVA-LPNQNERTKLLSAMVEARPDPALNARL-AEL 176
S++GAA+L GL W+DAR L A+ LPNQ+ ++ LS + + D A R A+
Sbjct: 129 SSIGAAYLHQNGLDMGWMDARQWLDALPPLPNQSPWSQRLSVNCQWKSDEAWAQRFRAQP 188
Query: 177 GEVFITQGFIAREAQGRTVLLGRGGSDTSASYFGALLKAQRVEIWTDVAGMFTANPRQVP 236
+ ITQGFIAR A G T +LGRGGSDTSA+YFGALL A RVEIWTDV GMF+ANP+ VP
Sbjct: 189 TRLLITQGFIARHADGGTAILGRGGSDTSAAYFGALLGASRVEIWTDVPGMFSANPKDVP 248
Query: 237 GARLLQRLDYEEAQEIASTGAKVLHPRCLSPLREPRVPMLIKDTNRPELEGTVIGPEVRE 296
ARLL RLDY EAQEIA+TGAKVLHPR + P R+ VPM I DT RPEL GT I
Sbjct: 249 DARLLTRLDYYEAQEIATTGAKVLHPRSIKPCRDAGVPMAILDTERPELPGTSIDGSAAP 308
Query: 297 HAPSVKAISARKGITLVSMESVGMWQQVGFLADVFAQFKQHGLSVDLIGSAETNVTVSLD 356
P VKAIS R GI LVSME +GMWQQVGFLADVF FK+HGLSVDLIGSAETNVTVSLD
Sbjct: 309 -VPGVKAISRRNGIVLVSMEGIGMWQQVGFLADVFGLFKKHGLSVDLIGSAETNVTVSLD 367
Query: 357 PTENLLDSDAIAALASDLAKVCRVKVIAPCAAITLVGRGMRSMLHTLSGVLAEFGQIRVH 416
P+ENL+++D +AAL++DL+++C+VK+I PCAAITLVGRGMRS+LH LS V A FG+ RVH
Sbjct: 368 PSENLVNTDVLAALSADLSQICKVKIIVPCAAITLVGRGMRSLLHKLSDVWATFGRERVH 427
Query: 417 LISQSSNNLNLTFVVDENVVDDLLPHLHELLIAAGALRTDDSALFGPSWQALYGSGEVAA 476
+ISQSSN+LNLTFV+DE D LLP LH LI +GA+ +++A+FGP W+ + +G V
Sbjct: 428 MISQSSNDLNLTFVIDETDADGLLPILHAELIDSGAMPVEETAVFGPRWREI--AGTVRP 485
Query: 477 PAASWWRTAERERLLRLGAERTPRYVYHLPTVRQQARELKSLGAVDRLHYAVKANTHPAI 536
WWR +R LL+L TPRYVYHLPTVR +AR L ++ +D+ +YA+KAN+HPAI
Sbjct: 486 RGTPWWR-GQRAHLLQLAEAGTPRYVYHLPTVRARARALAAITPIDQRYYAIKANSHPAI 544
Query: 537 LKALAEEGFGFECVSPGELKAVLAAVPESAP--LLFTPNFAPRADYEWALTTRATISLDA 594
L+ L EGFG ECVS GELK V +P +P +LFTP+F PR ++E A T+++D
Sbjct: 545 LETLEAEGFGLECVSHGELKHVFNVLPGLSPRRVLFTPSFCPREEFEAAFALGVTVTVDN 604
Query: 595 LYQLENWGELFRGREIVLRVDLGRGLGHHEKVRTGGSGSKFGLPVELVDSFLRLADAHGV 654
+ L+ W +LFR RE+ LRVDLGRG GHH KVRTGG SKFGLP+ VD F+R A G
Sbjct: 605 VEALQRWPDLFRNRELWLRVDLGRGEGHHAKVRTGGKESKFGLPMARVDEFVRAATELGT 664
Query: 655 IVRGLHAHLGSGILDEGHWGEVYGQLASLAERIGSVAFLDIGGGLGVPSHPGEARLDIAA 714
+ GLHAHLGSG+ HW + +LA A RIG+V +DIGGG+ +P + D+ A
Sbjct: 665 TIVGLHAHLGSGVETAQHWRLMCDELAGFARRIGTVQTIDIGGGMPIPYSEEDEPFDLEA 724
Query: 715 LDRVLRSVKAAYPHYQLWMEPGRYLVADAGVLLARVTQQKGKGSWRYLGVDTGMNSLIRP 774
L VKA +P ++L +EPGRYLVA++GVLL R TQ K R +G+D GMN+LIRP
Sbjct: 725 WAEGLAEVKAVHPAFRLAIEPGRYLVAESGVLLTRCTQVVEKEGVRRVGLDAGMNTLIRP 784
Query: 775 ALYEAWHEIVNLTRLDEPATGLFQVVGPICESGDVLGTDRRLP-EAQEGDVVLVAQAGAY 833
ALY+AWH+I NL+R A F VVGPICES DV G R+LP DV++VA AGAY
Sbjct: 785 ALYDAWHDIENLSRQGGYAEAAFDVVGPICESSDVFGKRRKLPASTAPDDVMVVADAGAY 844
Query: 834 GKVMSSPYNMRDEAEEVILD 853
G VM+S YN R E IL+
Sbjct: 845 GYVMASTYNQRAMPREDILE 864
Lambda K H
0.319 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1866
Number of extensions: 87
Number of successful extensions: 9
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 853
Length of database: 864
Length adjustment: 42
Effective length of query: 811
Effective length of database: 822
Effective search space: 666642
Effective search space used: 666642
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Align candidate WP_057507033.1 ABB28_RS02115 (bifunctional aspartate kinase/diaminopimelate decarboxylase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.31501.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31501.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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