Alignments for a candidate for thrB in Stenotrophomonas chelatiphaga DSM 21508

Align homoserine kinase (EC 2.7.1.39) (characterized)
to candidate WP_057506742.1 ABB28_RS00500 homoserine kinase

Query= reanno::Dyella79:N515DRAFT_0576
         (330 letters)



>NCBI__GCF_001431535.1:WP_057506742.1
          Length = 304

 Score =  388 bits (997), Expect = e-113
 Identities = 205/302 (67%), Positives = 235/302 (77%)

Query: 23  AQALAPASVGNVGIGFDILGHSVAGAGDRARVRRIDEPVVRIAAIEGCVVDLPLDPAQNT 82
           A+A APASVGNVG+GFDILGH++AG GD   VRRI E  VRI AI G  V LP + A NT
Sbjct: 3   ARAFAPASVGNVGVGFDILGHAIAGVGDTVTVRRIAEREVRIEAIRGADVPLPREAALNT 62

Query: 83  AGMALMALRKALGLRHGFELVLHKGIALGSGMGGSASSCVAALVAANALLERPLPMESLY 142
           AG +L+ALR+AL L  GF + + KGI LGSGMGGSA+SCVAALVAANALL+  L   +LY
Sbjct: 63  AGASLLALRQALDLPFGFAVEIDKGIPLGSGMGGSAASCVAALVAANALLDSALDRHALY 122

Query: 143 GFALEGEAVASGGRHGDNVGPMLLGGLVLATRDRLVRVPVPDAWHCALVHPHMVLETRKA 202
            FALEGE VASGGRHGDN+GPMLLGGLVL+T DRLV +PVP  WH  LVHP  VLETR+A
Sbjct: 123 RFALEGELVASGGRHGDNLGPMLLGGLVLSTADRLVPIPVPARWHSLLVHPDAVLETRRA 182

Query: 203 RAALAGAYQLGEFVAQSANLSLMLAGCWQGDAGLVREGLNDVLVEPRRAPLIPGFARVKQ 262
           RAAL G+Y LG+FVAQSANL+L+LAGC QGDA LVR GL DVLVEPRRAPLI GF   + 
Sbjct: 183 RAALQGSYALGDFVAQSANLALVLAGCHQGDATLVRAGLRDVLVEPRRAPLIIGFDAARA 242

Query: 263 AAMDHRAMGASISGAGPSVFGWFEQRDEAKAAAAAMAAAFAEAGLDSDTLVSPIAGPSAA 322
           AA+   AMGASISGAGPSVF WFE +  A+AAAA + AAFA +G DS   VS +A P+A 
Sbjct: 243 AALAAGAMGASISGAGPSVFAWFEDQASAQAAAAPVQAAFAASGFDSQAWVSSLAAPAAV 302

Query: 323 LI 324
           L+
Sbjct: 303 LL 304


Lambda     K      H
   0.320    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 337
Number of extensions: 11
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 304
Length adjustment: 27
Effective length of query: 303
Effective length of database: 277
Effective search space:    83931
Effective search space used:    83931
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_057506742.1 ABB28_RS00500 (homoserine kinase)
to HMM TIGR00191 (thrB: homoserine kinase (EC 2.7.1.39))

Software error:

../bin/blast/fastacmd -i /tmp/list.29066.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29066.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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