Alignments for a candidate for trpD_2 in Stenotrophomonas chelatiphaga DSM 21508

Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (characterized)
to candidate WP_057509110.1 ABB28_RS13455 anthranilate phosphoribosyltransferase

Query= SwissProt::Q8PD71
         (345 letters)



>NCBI__GCF_001431535.1:WP_057509110.1
          Length = 343

 Score =  527 bits (1357), Expect = e-154
 Identities = 268/338 (79%), Positives = 295/338 (87%)

Query: 1   MPITPQQALQRTIEHREIFHDEMVDLMRQIMRGEVSDAMVSAILTGLRVKKETIGEIAGA 60
           M  +PQ+ALQRTIEHREIF +EMVDLMRQIMRG+VS  M +AILTGLRVKKET+ EIA A
Sbjct: 1   MRFSPQEALQRTIEHREIFFEEMVDLMRQIMRGDVSPMMTAAILTGLRVKKETVDEIAAA 60

Query: 61  ATVMREFSRRVEVTDRRHMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSS 120
           ATVMREF+  V V D RHMVDIVGTGGDGSHTFNISTC+MFVAAA GA+VAKHGNRSVSS
Sbjct: 61  ATVMREFALPVPVADTRHMVDIVGTGGDGSHTFNISTCSMFVAAAAGARVAKHGNRSVSS 120

Query: 121 KSGSADALEALGAVIELQPEQVAASLAQTGIGFMYAPVHHPAMKVVAPVRREMGVRTIFN 180
           KSGSADA+EALGAVIELQP QVA ++ QTG+GFM+AP+HHPAMKVVAPVRREMGVRTIFN
Sbjct: 121 KSGSADAVEALGAVIELQPAQVAQAIEQTGVGFMFAPIHHPAMKVVAPVRREMGVRTIFN 180

Query: 181 ILGPLTNPAGSPNILMGVFHPDLVGIQARVLQELGAERALVVWGRDGMDELSLGAGTLVG 240
           ILGPLTNPA +P++LMGVFHPDLVGIQARVL+EL   RA+VVWGRD MDE+SLGAGTLVG
Sbjct: 181 ILGPLTNPASAPSVLMGVFHPDLVGIQARVLRELDTRRAMVVWGRDNMDEISLGAGTLVG 240

Query: 241 ELRDGQVHEYEVHPEDFGIAMSASRNLKVADAAESRAMLLQVLDNVPGPALDIVALNAGA 300
           ELRDG+V EYE+HPEDFGIAMSASRNL+V    +S AML  VLDN PGPALDIVALNAGA
Sbjct: 241 ELRDGKVREYEIHPEDFGIAMSASRNLRVDGPEQSIAMLRAVLDNEPGPALDIVALNAGA 300

Query: 301 ALYVAGVADSIADGIVRARQVLADGSARACLDAYVAFT 338
           ALYVA VA  I DG+ RAR  +ADGSARA L  YV  T
Sbjct: 301 ALYVADVASDIGDGLARARAAIADGSARARLQQYVDIT 338


Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 480
Number of extensions: 14
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 343
Length adjustment: 29
Effective length of query: 316
Effective length of database: 314
Effective search space:    99224
Effective search space used:    99224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_057509110.1 ABB28_RS13455 (anthranilate phosphoribosyltransferase)
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.11264.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11264.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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