Alignments for a candidate for ilvE in Stenotrophomonas chelatiphaga DSM 21508

Align branched-chain-amino-acid transaminase (EC 2.6.1.42) (characterized)
to candidate WP_042613067.1 ABB28_RS07920 branched-chain amino acid aminotransferase

Query= BRENDA::A0R066
         (368 letters)



>NCBI__GCF_001431535.1:WP_042613067.1
          Length = 364

 Score =  424 bits (1090), Expect = e-123
 Identities = 208/367 (56%), Positives = 268/367 (73%), Gaps = 4/367 (1%)

Query: 1   MNSGPLEFTVSANTNPATDAVRESILANPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGP 60
           M+   + F V+ + +P +   R +IL  PGFG ++TDHMV + +  D GWHNA V PYGP
Sbjct: 1   MSQSNISFDVTRSAHPRSADERAAILEKPGFGLHFTDHMVEVRWDKDTGWHNANVRPYGP 60

Query: 61  IQLDPSAIVLHYGQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVFI 120
           + LDP+A VLHYGQEIFEG+KAYR ADGS+ +FRP+AN  RLQ SA+RLA+PELP ++F+
Sbjct: 61  LLLDPAAAVLHYGQEIFEGIKAYRHADGSVWTFRPDANGRRLQRSAQRLALPELPVDIFV 120

Query: 121 ESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKGG 180
           ESL+QL+A+D+ WVP A  E SLY RPF+I  E  LGVR +++  Y +IASPAG YF  G
Sbjct: 121 ESLKQLVALDKDWVPSA-DESSLYFRPFMIGDEAFLGVRGAHKAGYYVIASPAGPYFAKG 179

Query: 181 IKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEE 240
           + PVS+WLS EY RA+ GGTGAAK GGNYAASLL Q +A   GC QV++LD  E +Y+EE
Sbjct: 180 VAPVSIWLSTEYARAAKGGTGAAKCGGNYAASLLPQQKAQAQGCSQVLFLDPTEGKYLEE 239

Query: 241 MGGMNLFFVFGSGGSARLVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKK 300
           +GGMN+F V+  G    LVTP+LSGS+L GITR+S+LQLA D G  VEERK+ +DEW++ 
Sbjct: 240 LGGMNVFLVYKDG---TLVTPQLSGSILEGITRESILQLARDRGMKVEERKVSIDEWKQG 296

Query: 301 AGAGEITEVFACGTAAVITPVSHVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFADT 360
             +GEITEVFACGTAAV+TP+  +K    E    +   GE+T++LR  LT IQ G   D 
Sbjct: 297 VASGEITEVFACGTAAVVTPIGQLKGEGFEVGDINAPAGEVTLSLRKELTDIQYGRLPDR 356

Query: 361 HGWMARL 367
           HGW+ +L
Sbjct: 357 HGWLVKL 363


Lambda     K      H
   0.318    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 465
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 364
Length adjustment: 30
Effective length of query: 338
Effective length of database: 334
Effective search space:   112892
Effective search space used:   112892
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_042613067.1 ABB28_RS07920 (branched-chain amino acid aminotransferase)
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.29955.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29955.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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