Align Acetolactate synthase isozyme 2 large subunit; AHAS-II; ALS-II; Acetohydroxy-acid synthase II large subunit; EC 2.2.1.6 (characterized)
to candidate WP_057509298.1 ABB28_RS14475 acetolactate synthase 2 catalytic subunit
Query= SwissProt::P0DP90 (548 letters) >NCBI__GCF_001431535.1:WP_057509298.1 Length = 578 Score = 647 bits (1669), Expect = 0.0 Identities = 327/553 (59%), Positives = 403/553 (72%), Gaps = 11/553 (1%) Query: 2 NGAQWVVHALRAQGVNTVFGYPGGAIMPVYDALYDGGVEHLLCRHEQGAAMAAIGYARAT 61 NGA+W+ AL A+GV T+FGYPGG IMP YDAL D ++H+L RHEQGAA+AA G+ARA+ Sbjct: 12 NGARWLTQALEAEGVQTLFGYPGGTIMPFYDALVDSRLKHVLVRHEQGAALAANGFARAS 71 Query: 62 GKTGVCIATSGPGATNLITGLADALLDSIPVVAITGQVSAPFIGTDAFQEVDVLGLSLAC 121 G+ GVCIATSGPGA+NL+TG+ADA+LDS+P+V ITGQV+ P +GTDAFQE+DV GL+L Sbjct: 72 GRVGVCIATSGPGASNLVTGIADAMLDSVPMVCITGQVATPLLGTDAFQELDVFGLTLPI 131 Query: 122 TKHSFLVQSLEELPRIMAEAFDVACSGRPGPVLVDIPKDIQLASGDLEPWFTTVENEVTF 181 KHS+LV+S+++LPR++AEAF +A GRPGPVL+D+PKD+Q+A P V V Sbjct: 132 VKHSWLVRSVDDLPRVVAEAFRIAREGRPGPVLIDLPKDVQVADASHLP--AHVPATVEA 189 Query: 182 PHAEVEQARQ----MLAKAQKPMLYVGGGVGMAQAVPALREFLAATKMPATCTLKGLGAV 237 P A EQA +A A+KP++Y GGG+ + AV ALR+F AA+ +PA TL+GLGA+ Sbjct: 190 PPAPAEQAIADAIAAIAGAEKPVIYAGGGIALGDAVDALRDFAAASGIPAVLTLRGLGAL 249 Query: 238 EADYPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDRVTGKLNTFAPHASVIHMDIDP 297 A +P LGMLGMHGT+AAN AVQE DLL+ +GARFDDR TGKL FAP A V+H+D D Sbjct: 250 PAGHPQSLGMLGMHGTRAANMAVQEADLLLVLGARFDDRATGKLTEFAPFARVVHIDADA 309 Query: 298 AEMNKLRQAHVALQGDLNALLPALQQ-----PLNQYDWQQHCAQLRDEHSWRYDHPGDAI 352 E++KLR A VA+ G++ + AL P Q W+ CAQ R++ RYD PG I Sbjct: 310 YEISKLRTADVAVPGNVAQAIRALHAAFPAPPATQAAWRNRCAQHREKFIARYDAPGKHI 369 Query: 353 YAPLLLKQLSDRKPADCVVTTDVGQHQMWAAQHIAHTRPENFITSSGLGTMGFGLPAAVG 412 YAP LLK+LS+ PAD V+ DVGQHQMW AQH P N +TS LGTMGFGLPAA+G Sbjct: 370 YAPALLKRLSELAPADAVIACDVGQHQMWVAQHCRFNHPRNHLTSGALGTMGFGLPAAMG 429 Query: 413 AQVARPNDTVVCISGDGSFMMNVQELGTVKRKQLPLKIVLLDNQRLGMVRQWQQLFFQER 472 AQ A P+ TVV +SGDGSFMMNVQEL T+ R +LP+KIVLLDN LGMVRQWQ+LFF ER Sbjct: 430 AQFACPDRTVVLVSGDGSFMMNVQELTTIARCRLPVKIVLLDNSSLGMVRQWQELFFAER 489 Query: 473 YSETTLTDNPDFLMLASAFGIHGQHITRKDQVEAALDTMLNSDGPYLLHVSIDELENVWP 532 YSE L+DNPDF+ LA FGI I +D VE L +L GP LLHV+ID NVWP Sbjct: 490 YSEIDLSDNPDFVALAKVFGIAATRIDARDDVEGGLAALLAEPGPALLHVAIDARANVWP 549 Query: 533 LVPPGASNSEMLE 545 LVPP +NS MLE Sbjct: 550 LVPPNTANSTMLE 562 Lambda K H 0.320 0.135 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 958 Number of extensions: 38 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 548 Length of database: 578 Length adjustment: 36 Effective length of query: 512 Effective length of database: 542 Effective search space: 277504 Effective search space used: 277504 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)
Align candidate WP_057509298.1 ABB28_RS14475 (acetolactate synthase 2 catalytic subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.13203.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13203.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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