Alignments for a candidate for argB in Billgrantia desiderata SP1

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate WP_086509007.1 BZY95_RS05700 acetylglutamate kinase

Query= BRENDA::Q9HTN2
         (301 letters)



>NCBI__GCF_002151265.1:WP_086509007.1
          Length = 306

 Score =  424 bits (1089), Expect = e-123
 Identities = 219/300 (73%), Positives = 253/300 (84%)

Query: 1   MTLSRDDAAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFARDVVLMKAVGI 60
           MT +  D   V +VLSEALPYI+RF GKT+V+KYGGNAM  + L   FAR++VLMK VGI
Sbjct: 1   MTETTRDPRLVVEVLSEALPYIQRFSGKTVVVKYGGNAMTEDTLIDSFARNMVLMKEVGI 60

Query: 61  NPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHG 120
           NPVVVHGGGPQIGDLL +L IES F++GMRVTD+ TMDVVEMVLGG VNK+IVNLIN+ G
Sbjct: 61  NPVVVHGGGPQIGDLLAKLKIESRFVNGMRVTDSETMDVVEMVLGGLVNKEIVNLINQCG 120

Query: 121 GSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIP 180
           G AIGLTGKD   IRA++L V  QTPEMT PEIIDIGHVGEV  V+  L+ ML + DFIP
Sbjct: 121 GKAIGLTGKDGAQIRARQLKVEHQTPEMTAPEIIDIGHVGEVEHVSTDLIEMLAERDFIP 180

Query: 181 VIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVLTGLSTEQVN 240
           VIAPIGV + G SYNINADLVAGKVAEAL AEKLMLLTN+AGLM+ +G+VLTGL+T QV+
Sbjct: 181 VIAPIGVDAKGNSYNINADLVAGKVAEALGAEKLMLLTNVAGLMNAEGEVLTGLTTAQVD 240

Query: 241 ELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNRKR 300
            LIADGTI+GGMLPKIRCAL+AV+GGV SAHIIDGRVP+A LLEIFT++GVGTLI++  R
Sbjct: 241 ALIADGTIHGGMLPKIRCALDAVKGGVRSAHIIDGRVPHATLLEIFTNAGVGTLITDADR 300


Lambda     K      H
   0.318    0.138    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 377
Number of extensions: 8
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 306
Length adjustment: 27
Effective length of query: 274
Effective length of database: 279
Effective search space:    76446
Effective search space used:    76446
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)

Align candidate WP_086509007.1 BZY95_RS05700 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.18838.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.18838.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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