Alignments for a candidate for argC in Billgrantia desiderata SP1

Align N-acetyl-gamma-glutamyl-phosphate reductase; Short=AGPR; EC 1.2.1.38 (characterized, see rationale)
to candidate WP_086510219.1 BZY95_RS12275 N-acetyl-gamma-glutamyl-phosphate reductase

Query= uniprot:E4PLW0
         (388 letters)



>NCBI__GCF_002151265.1:WP_086510219.1
          Length = 344

 Score =  469 bits (1208), Expect = e-137
 Identities = 240/347 (69%), Positives = 270/347 (77%), Gaps = 5/347 (1%)

Query: 44  VIKVGIVGGTGYTGVELLRILAVHPEVSVSCITSRSEAGMPVAEMYPNLRGHYD-LAFSE 102
           +IKVGIVGGTGYTGVELLR+LA H +V V  ITSRSEAG+ V +MYPNLRGHYD LAFSE
Sbjct: 1   MIKVGIVGGTGYTGVELLRLLAQHSQVEVEAITSRSEAGVRVCDMYPNLRGHYDELAFSE 60

Query: 103 PDVNVLGACDLVFFATPHGVAMRMVPELMSAGVRVVDLSADFRLKDLDVWANWYGMAHES 162
           PD   LGACD VFFATPHGVA  +  EL+  G RV+DLSADFRL+D +VWA WYG  H +
Sbjct: 61  PDPQRLGACDAVFFATPHGVAHALAGELLERGTRVIDLSADFRLRDAEVWAEWYGQPHGA 120

Query: 163 PEWAEKAVYGLPEVVRDEIRNAQLVANPGCYPTAVQLGFLPLLEQGLVDPKRLIADAKSG 222
           PE   +AVYGLPE+ R+ IR A+L+A PGCYPTAVQLG LPLLE GL+D   LIAD KSG
Sbjct: 121 PELLGEAVYGLPEMHRERIRQARLIAVPGCYPTAVQLGLLPLLEAGLIDADHLIADCKSG 180

Query: 223 ASGAGRQGKIGMLHGEIGESFKAYGASGHRHLPEIRQGLCGAAGGDVGVTFVPHLIPMIR 282
            +GAGR  K+  L  E  ES KAYGASGHRHLPEI QGL  AA G VG+TFVPHL PMIR
Sbjct: 181 VTGAGRGAKVPSLLAEASESMKAYGASGHRHLPEISQGLRDAANGPVGLTFVPHLTPMIR 240

Query: 283 GIEATLYAELK-NPADFDRLQALFEQRFDDEPFVDVMPFGSHPETRSVRGANQCRMALHR 341
           GI ATLY  L   P D   LQALFE+RF DEPFVDVMP GSHPETRSV+GAN CR+A+HR
Sbjct: 241 GIHATLYGRLTGEPGD---LQALFERRFADEPFVDVMPAGSHPETRSVKGANVCRLAVHR 297

Query: 342 QEQSNIVIVSSVIDNLVKGAAGQAVQNMNIMFGLKETMGLEAPALLP 388
               + V+V SVIDNLVKGA+GQAVQN+N+MFG  E  GL APAL+P
Sbjct: 298 PGNGDTVVVLSVIDNLVKGASGQAVQNLNLMFGFDEHAGLAAPALMP 344


Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 471
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 344
Length adjustment: 30
Effective length of query: 358
Effective length of database: 314
Effective search space:   112412
Effective search space used:   112412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_086510219.1 BZY95_RS12275 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.25050.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25050.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.