Alignments for a candidate for argG in Billgrantia desiderata SP1

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate WP_086510012.1 BZY95_RS11225 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>NCBI__GCF_002151265.1:WP_086510012.1
          Length = 406

 Score =  516 bits (1330), Expect = e-151
 Identities = 248/394 (62%), Positives = 311/394 (78%), Gaps = 4/394 (1%)

Query: 2   KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDL 61
           K+VLAYSGGLDTS+I+KWL+ETY  EV+ FTADIGQGEEVE AR KA   G  +    DL
Sbjct: 6   KVVLAYSGGLDTSVIVKWLQETYNCEVVTFTADIGQGEEVEPARAKAQALGVKEIYIEDL 65

Query: 62  KEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGND 121
           +EEFVRD+V+PM RA  +YEG YLLGTSIARPLIAK L+ IA E GA+AI+HGATGKGND
Sbjct: 66  REEFVRDYVYPMFRANTIYEGEYLLGTSIARPLIAKRLIEIANETGADAISHGATGKGND 125

Query: 122 QVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEK---PYSMDANL 178
           QVRFE+ AYALKP +KVIAPWREW    R++++AY E H IPV  ++ K   PYSMDANL
Sbjct: 126 QVRFEMGAYALKPGVKVIAPWREWDLTSREKLMAYCEQHDIPVDFSKSKKKSPYSMDANL 185

Query: 179 LHISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAAL 238
           LHISYEGG+LEDPWAE  + M+R +  PE APD P YVE+ + +GD VA++G+ + P  +
Sbjct: 186 LHISYEGGILEDPWAEAEEDMWRWSVSPEAAPDEPTYVELTYDKGDVVAIDGKPMKPHEV 245

Query: 239 LQRLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQR 298
           L+RLN++GG +G+GR+DIVENR+VGMKSRG YETPGGTI+  A RA+ES+TLDRE  H +
Sbjct: 246 LERLNKLGGDNGIGRLDIVENRYVGMKSRGCYETPGGTIMLRAHRAIESITLDREEAHLK 305

Query: 299 DMLSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLY 358
           D L PKYA+++Y G+W++PER  LQA  D   ++V GV R+KLYKGN  VVGRK+ +SL+
Sbjct: 306 DELMPKYAKVIYNGYWWSPERRMLQAAIDETQKNVCGVVRMKLYKGNATVVGRKSEQSLF 365

Query: 359 RQDLVSF-DEAGGYDQKDAEGFIKIQALRLRVRA 391
            + + +F D+AG Y+QKDAEGFIK+ ALRLR+ A
Sbjct: 366 DESIATFEDDAGAYNQKDAEGFIKLNALRLRIAA 399


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 524
Number of extensions: 19
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 406
Length adjustment: 31
Effective length of query: 369
Effective length of database: 375
Effective search space:   138375
Effective search space used:   138375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_086510012.1 BZY95_RS11225 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.11955.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11955.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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